View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9751_low_78 (Length: 241)

Name: NF9751_low_78
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9751_low_78
NF9751_low_78
[»] chr5 (21 HSPs)
chr5 (1-208)||(606512-606728)
chr5 (1-86)||(14089847-14089930)
chr5 (86-161)||(9784791-9784866)
chr5 (5-86)||(9784682-9784763)
chr5 (2-87)||(19495095-19495177)
chr5 (89-156)||(15635798-15635865)
chr5 (88-148)||(13542411-13542471)
chr5 (89-158)||(8433941-8434010)
chr5 (89-158)||(19495206-19495275)
chr5 (91-156)||(32273820-32273885)
chr5 (163-224)||(29045333-29045394)
chr5 (155-220)||(34338964-34339029)
chr5 (90-146)||(14089961-14090017)
chr5 (48-86)||(13542345-13542383)
chr5 (27-88)||(15635708-15635769)
chr5 (2-38)||(15072220-15072256)
chr5 (163-214)||(564924-564975)
chr5 (153-220)||(8713837-8713904)
chr5 (1-35)||(15635341-15635375)
chr5 (91-156)||(8681547-8681612)
chr5 (163-208)||(10284982-10285027)
[»] chr4 (37 HSPs)
chr4 (2-88)||(52676563-52676649)
chr4 (2-86)||(3161830-3161914)
chr4 (1-88)||(30599697-30599782)
chr4 (2-84)||(40982772-40982853)
chr4 (2-87)||(37978046-37978129)
chr4 (3-86)||(6077647-6077729)
chr4 (88-158)||(38298389-38298459)
chr4 (88-156)||(3161943-3162011)
chr4 (14-85)||(25231807-25231875)
chr4 (88-156)||(37247397-37247465)
chr4 (10-87)||(43968467-43968539)
chr4 (88-159)||(37978158-37978229)
chr4 (2-84)||(3657694-3657774)
chr4 (153-223)||(26876070-26876140)
chr4 (163-225)||(35808744-35808806)
chr4 (163-224)||(37624882-37624943)
chr4 (90-154)||(6077761-6077825)
chr4 (156-224)||(41621967-41622035)
chr4 (156-224)||(55969862-55969930)
chr4 (5-83)||(38298492-38298567)
chr4 (163-208)||(43595049-43595094)
chr4 (102-158)||(2062215-2062271)
chr4 (156-224)||(41735481-41735549)
chr4 (88-159)||(43968568-43968639)
chr4 (90-144)||(40982686-40982739)
chr4 (157-206)||(16958357-16958406)
chr4 (155-208)||(52270535-52270588)
chr4 (156-208)||(3121129-3121180)
chr4 (156-208)||(9093575-9093627)
chr4 (156-224)||(43142106-43142174)
chr4 (177-224)||(2168508-2168555)
chr4 (166-224)||(8680508-8680566)
chr4 (161-223)||(24504731-24504793)
chr4 (157-207)||(31861547-31861596)
chr4 (91-136)||(30599621-30599666)
chr4 (156-208)||(25231500-25231552)
chr4 (88-156)||(50122689-50122757)
[»] chr3 (26 HSPs)
chr3 (2-88)||(31153472-31153556)
chr3 (4-87)||(7932424-7932506)
chr3 (88-159)||(31153584-31153655)
chr3 (10-87)||(3432845-3432919)
chr3 (18-88)||(42760706-42760775)
chr3 (156-224)||(6488844-6488912)
chr3 (2-87)||(51305801-51305885)
chr3 (1-69)||(39994488-39994556)
chr3 (4-88)||(42004210-42004293)
chr3 (156-224)||(45249354-45249422)
chr3 (89-160)||(7932555-7932626)
chr3 (88-156)||(28963521-28963589)
chr3 (90-160)||(42760804-42760874)
chr3 (90-156)||(49615599-49615665)
chr3 (1-67)||(52315262-52315327)
chr3 (2-60)||(28963652-28963708)
chr3 (157-208)||(48993433-48993484)
chr3 (25-87)||(49615695-49615755)
chr3 (89-147)||(3432757-3432815)
chr3 (88-158)||(51305702-51305772)
chr3 (163-208)||(8108282-8108327)
chr3 (163-224)||(39611683-39611744)
chr3 (101-151)||(376952-377002)
chr3 (166-208)||(33865311-33865353)
chr3 (163-221)||(44455147-44455205)
chr3 (163-208)||(53466230-53466275)
[»] chr2 (19 HSPs)
chr2 (2-86)||(44277630-44277714)
chr2 (2-88)||(9707363-9707447)
chr2 (155-223)||(36904018-36904086)
chr2 (88-159)||(5552557-5552628)
chr2 (2-87)||(5552446-5552529)
chr2 (89-156)||(12392215-12392282)
chr2 (89-158)||(44277531-44277599)
chr2 (89-145)||(9707475-9707531)
chr2 (163-208)||(223892-223937)
chr2 (163-224)||(9047601-9047662)
chr2 (40-85)||(12392138-12392183)
chr2 (163-223)||(38402593-38402653)
chr2 (153-224)||(15335889-15335960)
chr2 (161-223)||(4428835-4428897)
chr2 (154-224)||(19955133-19955203)
chr2 (166-208)||(41283408-41283450)
chr2 (163-220)||(1758460-1758517)
chr2 (106-159)||(9976844-9976897)
chr2 (158-223)||(29794529-29794594)
[»] chr6 (6 HSPs)
chr6 (2-87)||(32025760-32025843)
chr6 (163-223)||(6100665-6100725)
chr6 (155-223)||(32147862-32147930)
chr6 (93-136)||(32025877-32025920)
chr6 (163-221)||(7984627-7984685)
chr6 (159-207)||(3989068-3989116)
[»] chr7 (19 HSPs)
chr7 (2-85)||(17000642-17000724)
chr7 (1-71)||(5355854-5355923)
chr7 (1-83)||(34967867-34967946)
chr7 (156-208)||(48488413-48488465)
chr7 (164-222)||(5081764-5081822)
chr7 (163-224)||(37869720-37869781)
chr7 (156-224)||(28646609-28646677)
chr7 (94-158)||(42252083-42252147)
chr7 (157-208)||(28514709-28514760)
chr7 (153-219)||(10625006-10625072)
chr7 (4-69)||(30833720-30833783)
chr7 (163-224)||(25119943-25120004)
chr7 (155-224)||(31191427-31191496)
chr7 (165-223)||(45618450-45618508)
chr7 (153-221)||(8584031-8584098)
chr7 (154-224)||(40198950-40199021)
chr7 (162-208)||(43803381-43803427)
chr7 (100-156)||(5355761-5355817)
chr7 (156-224)||(45662229-45662297)
[»] chr1 (21 HSPs)
chr1 (1-85)||(33726987-33727071)
chr1 (5-85)||(35616890-35616969)
chr1 (141-204)||(13984223-13984286)
chr1 (1-86)||(32827206-32827292)
chr1 (160-208)||(37297041-37297089)
chr1 (90-148)||(33727104-33727162)
chr1 (163-224)||(894834-894895)
chr1 (163-224)||(3831383-3831444)
chr1 (156-209)||(32213581-32213634)
chr1 (155-207)||(10040473-10040525)
chr1 (157-208)||(36563922-36563973)
chr1 (168-206)||(14104303-14104341)
chr1 (163-205)||(42410197-42410239)
chr1 (163-224)||(13208058-13208119)
chr1 (102-159)||(19512733-19512790)
chr1 (1-64)||(46592265-46592327)
chr1 (153-196)||(51049903-51049946)
chr1 (98-171)||(5300263-5300334)
chr1 (90-156)||(32827108-32827174)
chr1 (163-208)||(34038799-34038844)
chr1 (163-224)||(38067713-38067774)
[»] chr8 (19 HSPs)
chr8 (1-86)||(40678914-40678997)
chr8 (90-158)||(6106956-6107024)
chr8 (88-156)||(8644262-8644330)
chr8 (2-86)||(8644361-8644442)
chr8 (99-159)||(31511530-31511590)
chr8 (156-208)||(33015582-33015634)
chr8 (14-88)||(31511421-31511491)
chr8 (2-86)||(67589-67669)
chr8 (150-208)||(38573362-38573420)
chr8 (2-86)||(7206932-7207011)
chr8 (163-208)||(7642670-7642715)
chr8 (155-208)||(13018559-13018612)
chr8 (100-159)||(40678815-40678874)
chr8 (158-208)||(44395719-44395769)
chr8 (155-208)||(23518270-23518323)
chr8 (92-136)||(7206854-7206898)
chr8 (88-156)||(67697-67765)
chr8 (100-156)||(40229796-40229852)
chr8 (101-157)||(44103981-44104037)
[»] scaffold0154 (2 HSPs)
scaffold0154 (4-85)||(26898-26977)
scaffold0154 (90-156)||(26799-26865)
[»] scaffold0020 (1 HSPs)
scaffold0020 (163-224)||(171590-171651)
[»] scaffold0578 (1 HSPs)
scaffold0578 (102-159)||(10148-10205)
[»] scaffold0002 (1 HSPs)
scaffold0002 (153-224)||(433867-433936)


Alignment Details
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 606512 - 606728
Alignment:
Q  1 ctcatttatattccaccactaacatattattttaataaga-aaaagtgtgtggagaccactaaaagatgggggtcttaagttagaccctc---------- 89  Q
    ||||| || ||||||||||||||||||||||||||||| | ||||| ||||||  ||||||||||||||||| |||||    ||||||||              
T  606512 ctcatctacattccaccactaacatattattttaataaaacaaaagagtgtgggaaccactaaaagatgggg-tcttaga--agaccctcaaattttttc 606608  T
Q  90 -ccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactctaagggtattgtttaaacatctaaaagtagcaa 188  Q
     ||||||| |||||| |||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||| ||||||||| ||||||||| ||||||    
T  606609 cccacaatgggagtatctattaggtactaggtcttaaatggtgaagacctcaccattgtggatgctctaagggcattgtttaagcatctaaaaatagcaa 606708  T
Q  189 cttttgcattgaaaattgta 208  Q
     |||| ||||| ||||||||    
T  606709 tttttacattggaaattgta 606728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 14089847 - 14089930
Alignment:
Q  1 ctcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagacc 86  Q
    |||||||| ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  14089847 ctcatttacattccaccactaacatattattttaataa-aaaaaatgtgtggggaccactaaaagat-ggggtcttaagttagacc 14089930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 9784791 - 9784866
Alignment:
Q  86 cctcccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactctaaggg 161  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||    
T  9784791 cctcccacaatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccattgtggatgctctaaggg 9784866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 9784682 - 9784763
Alignment:
Q  5 tttatattccaccactaacatattattttaataagaaaaagtgtgt-ggagaccactaaaagatgggggtcttaagttagacc 86  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || |||||||||||||||    
T  9784682 tttacattccaccactaacatattattttaataaaaaaaagtgtgtgggagatcactaaaagat-ggagtcttaagttagacc 9784763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 19495095 - 19495177
Alignment:
Q  2 tcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagaccc 87  Q
    ||||||| ||||||||||||||||||||||||||||  ||||||||||||| ||||||| ||||||  ||||||||||||||||||    
T  19495095 tcatttaaattccaccactaacatattattttaata--aaaaagtgtgtggggaccacttaaagat-agggtcttaagttagaccc 19495177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 15635798 - 15635865
Alignment:
Q  89 cccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactct 156  Q
    |||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||    
T  15635798 cccacaatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccattgtggatgctct 15635865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 13542411 - 13542471
Alignment:
Q  88 tcccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtg 148  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||||    
T  13542411 tcccacaatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccattgtg 13542471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 8433941 - 8434010
Alignment:
Q  89 cccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactctaa 158  Q
    |||||||| || ||||||||||||||| || ||||| ||||||||||| |||||||||||||| ||||||    
T  8433941 cccacaatgggggtacctattaggtaccaggtcttaaatggtgaagacctcaccattgtggatgctctaa 8434010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 19495206 - 19495275
Alignment:
Q  89 cccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactctaa 158  Q
    |||| ||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||| ||| ||||||    
T  19495206 cccataatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccattgtagatgctctaa 19495275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 32273820 - 32273885
Alignment:
Q  91 cacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactct 156  Q
    |||||| ||||||||||||||||||||| ||||| ||||||||||| |||||| | ||||||||||    
T  32273820 cacaatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccaatatggatactct 32273885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 29045333 - 29045394
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    ||||||||| ||||||||||||| || ||||||||| |||||| ||| ||||||||||||||    
T  29045333 attgtttaaccatctaaaagtagtaatttttgcattaaaaattatatagttatgactttaac 29045394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 34339029 - 34338964
Alignment:
Q  155 ctaagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactt 220  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||| ||| ||| | ||||| ||||    
T  34339029 ctaagggtattgtttaagcatctaaaaatagcaacttttgcattggaaagtgtgtggttataactt 34338964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 14089961 - 14090017
Alignment:
Q  90 ccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattg 146  Q
    ||||||| | ||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  14089961 ccacaatggaagtacctattaggtactaggtcttaaatggtgaagacctcaccattg 14090017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 13542345 - 13542383
Alignment:
Q  48 tgtggagaccactaaaagatgggggtcttaagttagacc 86  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  13542345 tgtggggaccactaaaagatgggggtcttaagttagacc 13542383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 15635708 - 15635769
Alignment:
Q  27 ttattttaataagaaaaagtgtgtggagaccactaaa-agatgggggtcttaagttagaccct 88  Q
    |||||||||||| ||||||||||||| |||||||||| | |||| ||||||||||||||||||    
T  15635708 ttattttaataa-aaaaagtgtgtggggaccactaaacacatggaggtcttaagttagaccct 15635769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 15072220 - 15072256
Alignment:
Q  2 tcatttatattccaccactaacatattattttaataa 38  Q
    ||||||| |||||||||||||||||||||||||||||    
T  15072220 tcatttaaattccaccactaacatattattttaataa 15072256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 564924 - 564975
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgtta 214  Q
    ||||||||| ||||||||| ||| ||||||||||||| ||||||||| ||||    
T  564924 attgtttaagcatctaaaaatagtaacttttgcattggaaattgtatagtta 564975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 8713904 - 8713837
Alignment:
Q  153 ctctaagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactt 220  Q
    ||||||||||||||||||| ||| |||||||| ||||||||| |||  |||||||   ||||||||||    
T  8713904 ctctaagggtattgtttaagcatttaaaagtaacaacttttgtattagaaattgtgcagttatgactt 8713837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 15635341 - 15635375
Alignment:
Q  1 ctcatttatattccaccactaacatattattttaa 35  Q
    |||||||| ||||||||||||||||||||||||||    
T  15635341 ctcatttacattccaccactaacatattattttaa 15635375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 8681547 - 8681612
Alignment:
Q  91 cacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactct 156  Q
    |||||| |||||||||||||| |||| ||||||| ||||| || |||| |||| ||||||| ||||    
T  8681547 cacaatgggagtacctattagatactggatcttaaatggtaaaaactttaccaatgtggatgctct 8681612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 10284982 - 10285027
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    ||||||||| ||||||||||||| |||||||| |||| ||||||||    
T  10284982 attgtttaagcatctaaaagtagtaacttttgtattggaaattgta 10285027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 52676563 - 52676649
Alignment:
Q  2 tcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagaccct 88  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  52676563 tcatttacattccaccactaatatattattttaataaaaaaaagtgtgtggggaccactaaaagatgggggtcttaagttagaccct 52676649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 3161830 - 3161914
Alignment:
Q  2 tcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagacc 86  Q
    ||||||| ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||    
T  3161830 tcatttacattccaccactaacatattattttaataaaaaaaaatgtgtggggaccactaaaagatgggggtcttaagttagacc 3161914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 30599782 - 30599697
Alignment:
Q  1 ctcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagaccct 88  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  30599782 ctcatttgcattccaccactaacatattattttaataa-aaaaagtgtgtggggaccactaaaagat-ggggtcttaagttagaccct 30599697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 40982853 - 40982772
Alignment:
Q  2 tcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttaga 84  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||| |||||||||||||||    
T  40982853 tcatttaaatttcaccactaacatattattttaataa-aaaaagtgtgtggggaccacttaaagatgtgggtcttaagttaga 40982772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 37978046 - 37978129
Alignment:
Q  2 tcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagaccc 87  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||  |||||| ||||||| |||| |||||||||||||    
T  37978046 tcatttaaattccaccactaacatattattttaataa-aaaaagtgtgtgggaaccacttaaagatgagggt-ttaagttagaccc 37978129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 6077647 - 6077729
Alignment:
Q  3 catttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagacc 86  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||||||| ||| | | |||||||||||| ||||||||||||    
T  6077647 catttaaattccaccaataacatattattttaataa-aaaaagtgtgtggggactaattaaagatgggggttttaagttagacc 6077729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 38298459 - 38298389
Alignment:
Q  88 tcccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactctaa 158  Q
    ||||||||||| | ||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||    
T  38298459 tcccacaatagaaatacctattaagtactagatcttaaatggtgaagacctcaccattgtggatgctctaa 38298389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 3161943 - 3162011
Alignment:
Q  88 tcccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactct 156  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||||||| ||| |||||||||| ||||    
T  3161943 tcccacaatgggagtacatattaggtactagatcttaaatggtgaagacctcaacattgtggatgctct 3162011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 25231807 - 25231875
Alignment:
Q  14 caccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagac 85  Q
    ||||||||||||||||||||||||  ||||||||||||| ||||||| |||||| |||||||||||||||||    
T  25231807 caccactaacatattattttaata--aaaaagtgtgtggggaccacttaaagat-ggggtcttaagttagac 25231875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 37247397 - 37247465
Alignment:
Q  88 tcccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactct 156  Q
    |||||||||| | ||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||    
T  37247397 tcccacaataagggtacctattaggtaccagatcttaaatggtgaagacctcaccattgtggatgctct 37247465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 43968467 - 43968539
Alignment:
Q  10 attccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagaccc 87  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||    ||||||||||||||||    
T  43968467 attccaccactaacatattattttaataa-aaaaagtgtgtggggaccacttaaagat----gtcttaagttagaccc 43968539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 37978158 - 37978229
Alignment:
Q  88 tcccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactctaag 159  Q
    ||||||||| | ||||||||||||||||||  ||||| |||||||||||||||||||||| ||| |||||||    
T  37978158 tcccacaatggaagtacctattaggtactaagtcttaaatggtgaagacttcaccattgtagatgctctaag 37978229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 3657774 - 3657694
Alignment:
Q  2 tcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttaga 84  Q
    ||||||||||||||||||||||||||||||||||||| |||  || ||||| ||||| |||||||| | ||||||||||||||    
T  3657774 tcatttatattccaccactaacatattattttaataa-aaattgtatgtggggaccattaaaagat-gaggtcttaagttaga 3657694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 26876070 - 26876140
Alignment:
Q  153 ctctaagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaa 223  Q
    ||||||||||||||||||| ||| ||||||||||| |||||| |||| ||||||||  |||||||||||||    
T  26876070 ctctaagggtattgtttaagcatataaaagtagcagcttttgtattggaaattgtagggttatgactttaa 26876140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 225
Target Start/End: Complemental strand, 35808806 - 35808744
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaact 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||  ||||| |||| ||||    
T  35808806 attgtttaagcatctaaaagtagcaacttttgcattgaaaattgtacggttataacttcaact 35808744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 37624943 - 37624882
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||  ||||| ||||||||    
T  37624943 attgtttaagcatctaaaagtagtaacttttgcattgaaaattgtacggttataactttaac 37624882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 6077761 - 6077825
Alignment:
Q  90 ccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatact 154  Q
    ||||||| | ||||||||||||||||||| ||||| ||||||||||| |||||||||| ||||||    
T  6077761 ccacaatggaagtacctattaggtactaggtcttaaatggtgaagacctcaccattgtagatact 6077825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 41622035 - 41621967
Alignment:
Q  156 taagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    |||||| ||||||||| ||| ||||||||||||||||| ||||||||||||||   |||||||||||||    
T  41622035 taagggcattgtttaagcatataaaagtagcaacttttacattgaaaattgtacgattatgactttaac 41621967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 55969862 - 55969930
Alignment:
Q  156 taagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    |||||||||||||||| ||| ||||| |||||||||||||||| |||||||||  ||| ||||||||||    
T  55969862 taagggtattgtttaagcatataaaaatagcaacttttgcattaaaaattgtagggttgtgactttaac 55969930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 38298567 - 38298492
Alignment:
Q  5 tttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttag 83  Q
    |||| ||||||||||||||||  ||||||||||| ||||||||||||| ||||||||||| ||  ||||||||||||||    
T  38298567 tttacattccaccactaacat--tattttaataa-aaaaagtgtgtggggaccactaaaaaataagggtcttaagttag 38298492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 43595094 - 43595049
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||    
T  43595094 attgtttaagcatctaaaagtagcaacttttgtattgaaaattgta 43595049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 2062271 - 2062215
Alignment:
Q  102 tacctattaggtactagatcttagatggtgaagacttcaccattgtggatactctaa 158  Q
    ||||||||| |||| |||||||| ||||||||||| |||||||||| ||||||||||    
T  2062271 tacctattaagtaccagatcttaaatggtgaagacctcaccattgtagatactctaa 2062215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 41735549 - 41735481
Alignment:
Q  156 taagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    |||||| ||||||||| |||||||||||||||| ||||| |||| ||||||||   |||||||||||||    
T  41735549 taagggcattgtttaagcatctaaaagtagcaatttttgtattggaaattgtacgattatgactttaac 41735481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 43968568 - 43968639
Alignment:
Q  88 tcccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactctaag 159  Q
    ||||| ||| ||||||||||||||||||||| ||||| ||  ||||||| |||||||||| ||| |||||||    
T  43968568 tcccataatgggagtacctattaggtactaggtcttaaataatgaagacctcaccattgtagatgctctaag 43968639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 40982739 - 40982686
Alignment:
Q  90 ccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccat 144  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||| |||||||    
T  40982739 ccacaataggagtac-tattaggtactaggtcttaaatggtgaagacctcaccat 40982686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 16958357 - 16958406
Alignment:
Q  157 aagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattg 206  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||| ||||||    
T  16958357 aagggcattgtttaagcatctaaaagtagcaacttttacattggaaattg 16958406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 52270588 - 52270535
Alignment:
Q  155 ctaagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    ||||||| ||||||||| ||| ||||| ||||||||||||||||| ||||||||    
T  52270588 ctaagggcattgtttaagcatataaaaatagcaacttttgcattggaaattgta 52270535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 3121180 - 3121129
Alignment:
Q  156 taagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    |||||| ||||||||| |||||||||||||| || ||||||||||||||||||    
T  3121180 taagggcattgtttaagcatctaaaagtagcgac-tttgcattgaaaattgta 3121129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 9093575 - 9093627
Alignment:
Q  156 taagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    ||||||||||||||||   ||||||||||| || |||||||||||||||||||    
T  9093575 taagggtattgtttaagtctctaaaagtagtaatttttgcattgaaaattgta 9093627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 43142174 - 43142106
Alignment:
Q  156 taagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    |||||||||| ||||| ||| ||||||||  || |||||||||| ||||||||  ||||||||||||||    
T  43142174 taagggtattatttaagcatataaaagtaataatttttgcattggaaattgtaaggttatgactttaac 43142106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 2168555 - 2168508
Alignment:
Q  177 taaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    |||||||| |||||||||||||||||||||||  |||| |||||||||    
T  2168555 taaaagtaacaacttttgcattgaaaattgtacggttacgactttaac 2168508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 8680508 - 8680566
Alignment:
Q  166 gtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    |||||||| | |||||||| |||||||||||||| ||||||||   |||||||||||||    
T  8680508 gtttaaacttataaaagtaccaacttttgcattggaaattgtacgattatgactttaac 8680566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 24504793 - 24504731
Alignment:
Q  161 gtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaa 223  Q
    ||||||||||| ||||||||| || ||||||||| ||| |||||||||  ||||| |||||||    
T  24504793 gtattgtttaagcatctaaaaatatcaacttttgtattaaaaattgtacggttataactttaa 24504731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 31861547 - 31861596
Alignment:
Q  157 aagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgt 207  Q
    ||||| ||||||||| ||||||||| ||||||||||||||||| |||||||    
T  31861547 aagggcattgtttaagcatctaaaa-tagcaacttttgcattggaaattgt 31861596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 30599666 - 30599621
Alignment:
Q  91 cacaataggagtacctattaggtactagatcttagatggtgaagac 136  Q
    |||||| | |||||||||||| |||||||||||| |||||||||||    
T  30599666 cacaatggaagtacctattagatactagatcttaaatggtgaagac 30599621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 25231500 - 25231552
Alignment:
Q  156 taagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    |||||| || ||| || ||||||||| ||||||||||||||||| ||||||||    
T  25231500 taagggcatggttcaagcatctaaaactagcaacttttgcattggaaattgta 25231552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 50122689 - 50122757
Alignment:
Q  88 tcccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactct 156  Q
    |||||||||||| ||||||| ||||||| |||||||| ||| | ||||||   ||||||||||| ||||    
T  50122689 tcccacaataggggtacctaataggtacgagatcttaaatgtttaagactcttccattgtggatgctct 50122757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 31153472 - 31153556
Alignment:
Q  2 tcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagaccct 88  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  31153472 tcatttacattccaccactaacatattattttaataa-aaaaagtgtgtggggaccactaaaagat-ggggtcttaagttagaccct 31153556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 7932424 - 7932506
Alignment:
Q  4 atttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagaccc 87  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||    
T  7932424 atttacattccaccactaatatattattttaataa-aaaaagtgtgtggaaaccactaaaagatgggggtcttaaattagaccc 7932506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 31153584 - 31153655
Alignment:
Q  88 tcccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactctaag 159  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||    
T  31153584 tcccacaatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccattgtggatgctctaag 31153655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 3432919 - 3432845
Alignment:
Q  10 attccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagaccc 87  Q
    ||||||||||||||||||||||||||||  ||||||||||||| ||||||| |||||| |||||||||||||||||||    
T  3432919 attccaccactaacatattattttaata--aaaaagtgtgtggggaccacttaaagat-ggggtcttaagttagaccc 3432845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 42760706 - 42760775
Alignment:
Q  18 actaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagaccct 88  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  42760706 actaatatattattttaataa-aaaaagtgtgtggagaccactaaaagatgagggtcttaaattagaccct 42760775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 6488912 - 6488844
Alignment:
Q  156 taagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    |||||| ||||||||| ||| |||||||||||||||||||||||||||||||| | |||||||||||||    
T  6488912 taagggcattgtttaagcatttaaaagtagcaacttttgcattgaaaattgtactattatgactttaac 6488844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 51305885 - 51305801
Alignment:
Q  2 tcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgg-gggtcttaagttagaccc 87  Q
    ||||||| ||| ||||||||||||||||||||||||  ||||||||||||| || |||| |||||||| ||||||||||||||||||    
T  51305885 tcatttaaatttcaccactaacatattattttaata--aaaaagtgtgtggggatcacttaaagatggagggtcttaagttagaccc 51305801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 39994556 - 39994488
Alignment:
Q  1 ctcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgg 69  Q
    |||||||| ||| || ||||||||||||||| |||||| ||||||||||||| ||||||||||||||||    
T  39994556 ctcatttacatttcatcactaacatattattataataaaaaaaagtgtgtggggaccactaaaagatgg 39994488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 42004293 - 42004210
Alignment:
Q  4 atttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagaccct 88  Q
    ||||| ||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||| ||| ||||||||  |||||||||    
T  42004293 atttacattccaccattaacatattattttaataa-aaaaagtgtgtggggactactaaaatatgagggtcttatattagaccct 42004210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 45249354 - 45249422
Alignment:
Q  156 taagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  45249354 taagggcattgtttaagcatataaaagtagcaacttttgcattggaaattgtacggttatgactttaac 45249422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 7932555 - 7932626
Alignment:
Q  89 cccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactctaagg 160  Q
    |||| ||||||||||||||||||||||||| ||||| ||||||||||| |||| ||||| ||| ||||||||    
T  7932555 cccataataggagtacctattaggtactaggtcttaaatggtgaagacctcactattgtagatgctctaagg 7932626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 28963589 - 28963521
Alignment:
Q  88 tcccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactct 156  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||||||  |||||||||| ||| ||||    
T  28963589 tcccacaatgggagtacctattaggtactaggtcttaaatggtgaagatctcaccattgtagatgctct 28963521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 42760804 - 42760874
Alignment:
Q  90 ccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactctaagg 160  Q
    ||||||| |||| ||||||||| |||||||| ||| ||| ||||||| |||||||||||||| ||||||||    
T  42760804 ccacaatgggagcacctattagatactagattttaaatgatgaagacctcaccattgtggatgctctaagg 42760874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 49615665 - 49615599
Alignment:
Q  90 ccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactct 156  Q
    ||||||| | ||||||||||||||||||| ||||| ||||||||||| |||||||||| ||| ||||    
T  49615665 ccacaatggaagtacctattaggtactaggtcttaaatggtgaagacctcaccattgtagatgctct 49615599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 52315327 - 52315262
Alignment:
Q  1 ctcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagat 67  Q
    |||||||| |||||| ||| ||| |||||||||||||| ||||| ||||||||||||||||||||||    
T  52315327 ctcatttacattccatcaccaacgtattattttaataaaaaaaa-tgtgtggagaccactaaaagat 52315262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 28963708 - 28963652
Alignment:
Q  2 tcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccact 60  Q
    ||||||| ||||||||||||||||||||||||||||  ||||||||| ||| |||||||    
T  28963708 tcatttaaattccaccactaacatattattttaata--aaaaagtgtatggggaccact 28963652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 48993484 - 48993433
Alignment:
Q  157 aagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||| ||||||||    
T  48993484 aagggcattgtttaagcatctaaaagtagcaactttttcattggaaattgta 48993433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 49615755 - 49615695
Alignment:
Q  25 tattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagaccc 87  Q
    ||||||||||||||  |||||||||||| ||||||| ||||||||  ||||||||||||||||    
T  49615755 tattattttaataa--aaaagtgtgtggggaccacttaaagatggaagtcttaagttagaccc 49615695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 3432815 - 3432757
Alignment:
Q  89 cccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgt 147  Q
    |||||||| | ||||||||||| ||||||| ||||| ||||||||||| ||||||||||    
T  3432815 cccacaatggaagtacctattatgtactaggtcttaaatggtgaagacctcaccattgt 3432757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 51305772 - 51305702
Alignment:
Q  88 tcccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactctaa 158  Q
    ||||||||| ||||||| | ||||||||||| ||||| ||||||||||| ||| |||||| ||| ||||||    
T  51305772 tcccacaatgggagtacttgttaggtactaggtcttaaatggtgaagacctcatcattgtagatgctctaa 51305702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 8108327 - 8108282
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    ||||||||| |||||||||||| |||||||||||||| ||||||||    
T  8108327 attgtttaagcatctaaaagtaacaacttttgcattggaaattgta 8108282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 39611744 - 39611683
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    ||||||||| ||| | |||||||||| ||||||| |||||||||||  ||||||||||||||    
T  39611744 attgtttaagcattttaaagtagcaatttttgcactgaaaattgtacagttatgactttaac 39611683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 377002 - 376952
Alignment:
Q  101 gtacctattaggtactagatcttagatggtgaagacttcaccattgtggat 151  Q
    ||||||||||| |||||| ||||| ||||||||||| ||||||||| ||||    
T  377002 gtacctattagatactaggtcttaaatggtgaagacctcaccattgaggat 376952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 33865353 - 33865311
Alignment:
Q  166 gtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    |||||| ||| ||||||||||||||||||||||| ||||||||    
T  33865353 gtttaagcatataaaagtagcaacttttgcattggaaattgta 33865311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 44455205 - 44455147
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgacttt 221  Q
    |||||||||  |||||||||| | || |||| ||||||||||||||| |||||||||||    
T  44455205 attgtttaagaatctaaaagtcgtaaattttacattgaaaattgtatagttatgacttt 44455147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 53466230 - 53466275
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    |||||||||  ||||||||| | |||||||||||||||||||||||    
T  53466230 attgtttaagtatctaaaagaaacaacttttgcattgaaaattgta 53466275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 44277714 - 44277630
Alignment:
Q  2 tcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagacc 86  Q
    ||||||| |||||||||| |||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||| |||||||    
T  44277714 tcatttacattccaccaccaacatattattttaataaaaaaaagtgtgttgggaccactaaaagatgggggtcttaacttagacc 44277630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 9707363 - 9707447
Alignment:
Q  2 tcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagaccct 88  Q
    ||||||| |||||||||||||||| |||||||||| |  |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  9707363 tcatttacattccaccactaacatgttattttaatta--aaaagtgtgtggggaccactgaaagatgggggtcttaagttagaccct 9707447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 36904086 - 36904018
Alignment:
Q  155 ctaagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaa 223  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||  |||||||||||||    
T  36904086 ctaagggcattgtttaagcatctaaaagtagcaacttttgcattggaaattgtacggttatgactttaa 36904018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 5552557 - 5552628
Alignment:
Q  88 tcccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactctaag 159  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||| ||| |||||||    
T  5552557 tcccacaatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccattgtagatgctctaag 5552628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 5552446 - 5552529
Alignment:
Q  2 tcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagaccc 87  Q
    ||||||| ||| || ||||||||||||||||||||||  ||| |||||||| ||| ||| ||||||||||||||||||||||||||    
T  5552446 tcatttaaatttcagcactaacatattattttaataa--aaatgtgtgtggggactacttaaagatgggggtcttaagttagaccc 5552529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 12392215 - 12392282
Alignment:
Q  89 cccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactct 156  Q
    |||||||||||||||||||||||||||||| ||||| |||| |||||| |||||||| ||||| ||||    
T  12392215 cccacaataggagtacctattaggtactaggtcttaaatggggaagacctcaccattatggatgctct 12392282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 44277599 - 44277531
Alignment:
Q  89 cccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactctaa 158  Q
    ||||||||  |||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||    
T  44277599 cccacaatgagagtacctattaggtactaggtcttaaatggtgaagac-tcaccattgtggatgctctaa 44277531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 9707475 - 9707531
Alignment:
Q  89 cccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccatt 145  Q
    |||||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||    
T  9707475 cccacaatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccatt 9707531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 223892 - 223937
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||    
T  223892 attgtttaagcatctaaaagtagcaatttttgcattgaaaattgta 223937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 9047601 - 9047662
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    ||||||||| ||| |||||||| |||||||| ||||||||||||||  ||||||||||||||    
T  9047601 attgtttaatcatataaaagtaacaacttttacattgaaaattgtacggttatgactttaac 9047662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 12392138 - 12392183
Alignment:
Q  40 aaaaagtgtgtggagaccactaaaagatgggggtcttaagttagac 85  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||    
T  12392138 aaaaagtgtgtggggaccactaaaagatgggggttttaagttagac 12392183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 38402653 - 38402593
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaa 223  Q
    ||||||||  |||||||||||||||||||||| |||| ||||||||  |||||||||||||    
T  38402653 attgtttaggcatctaaaagtagcaacttttgtattggaaattgtacggttatgactttaa 38402593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 15335960 - 15335889
Alignment:
Q  153 ctctaagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    |||| |||| ||||||||| |||||||||||||||| |||||||||  ||||||||   |||||||||||||    
T  15335960 ctctcagggcattgtttaagcatctaaaagtagcaatttttgcatttgaaattgtacaattatgactttaac 15335889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 4428897 - 4428835
Alignment:
Q  161 gtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaa 223  Q
    ||||||||||| |||||||  |||||||||||| ||||||||||| ||  |||||||||||||    
T  4428897 gtattgtttaagcatctaattgtagcaacttttacattgaaaattatacggttatgactttaa 4428835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 19955203 - 19955133
Alignment:
Q  154 tctaagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    ||||| |||||| ||||| ||| |||||||||||||||||  |||| ||||| |||  |||||||||||||    
T  19955203 tctaaaggtattatttaagcatataaaagtagcaacttttttattggaaattatatgattatgactttaac 19955133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 41283450 - 41283408
Alignment:
Q  166 gtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    |||||||||||||||||||  |||||||| |||||||||||||    
T  41283450 gtttaaacatctaaaagtattaacttttgtattgaaaattgta 41283408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 1758460 - 1758517
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactt 220  Q
    ||||||||| ||||||||||||| |||||||||||  |||||||| | | ||||||||    
T  1758460 attgtttaagcatctaaaagtagtaacttttgcataaaaaattgtgtagatatgactt 1758517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 9976844 - 9976897
Alignment:
Q  106 tattaggtactagatcttagatggtgaagacttcaccattgtggatactctaag 159  Q
    |||||| ||| | |||||| ||||||||||| |||||||||||||| |||||||    
T  9976844 tattagataccaaatcttaaatggtgaagacctcaccattgtggatgctctaag 9976897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 29794594 - 29794529
Alignment:
Q  158 agggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaa 223  Q
    |||||||| ||||| || ||||||||||||| |||||||| ||||||||    |||||||||||||    
T  29794594 agggtattatttaatcaactaaaagtagcaatttttgcatagaaaattgcgcagttatgactttaa 29794529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 32025760 - 32025843
Alignment:
Q  2 tcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagaccc 87  Q
    ||||||| |||||||||||||||||||||||||||||  | |||||||||| ||||||| ||||||||||||||||||||||||||    
T  32025760 tcatttaaattccaccactaacatattattttaataa--agaagtgtgtggggaccacttaaagatgggggtcttaagttagaccc 32025843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 6100665 - 6100725
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaa 223  Q
    ||||||||| ||| ||||||||||||||||||||||||||||| ||  |||||||||||||    
T  6100665 attgtttaagcatataaaagtagcaacttttgcattgaaaattatagggttatgactttaa 6100725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 32147862 - 32147930
Alignment:
Q  155 ctaagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaa 223  Q
    ||||||| ||||||||| ||| ||||||||| || |||||||||| ||||||||  |||||||||||||    
T  32147862 ctaagggcattgtttaagcatataaaagtagtaatttttgcattgcaaattgtacggttatgactttaa 32147930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 32025877 - 32025920
Alignment:
Q  93 caataggagtacctattaggtactagatcttagatggtgaagac 136  Q
    |||| ||||||||||||||||||||| ||||| |||||||||||    
T  32025877 caatgggagtacctattaggtactaggtcttaaatggtgaagac 32025920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 7984685 - 7984627
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgacttt 221  Q
    ||||||||| |||| ||||||||||| |||| ||||||||||| | | |||||||||||    
T  7984685 attgtttaagcatccaaaagtagcaaattttacattgaaaattttgtagttatgacttt 7984627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 3989116 - 3989068
Alignment:
Q  159 gggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgt 207  Q
    ||||||||||||| |||||||||||||  |||||| |||| ||||||||    
T  3989116 gggtattgtttaagcatctaaaagtagtcacttttacatttaaaattgt 3989068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 17000642 - 17000724
Alignment:
Q  2 tcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagac 85  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||| ||||| || |||||||||||| ||||||||||||||||    
T  17000642 tcatttacattccaccactaacatattattttaataa-aaaaagtatgtggggatcactaaaagatgagggtcttaagttagac 17000724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 5355923 - 5355854
Alignment:
Q  1 ctcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggg 71  Q
    |||||||| ||||||||| ||||||||||||||||||| |||||||||| || ||||||||||||||||||    
T  5355923 ctcatttacattccaccattaacatattattttaataa-aaaaagtgtgaggggaccactaaaagatgggg 5355854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 34967946 - 34967867
Alignment:
Q  1 ctcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttag 83  Q
    ||||||||  |||||||||||||||||||||||||||| | |||||||| ||| |||||||||||||||||||||||||||||    
T  34967946 ctcatttactttccaccactaacatattattttaataa-agaaagtgtg-gga-accactaaaagatgggggtcttaagttag 34967867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 48488413 - 48488465
Alignment:
Q  156 taagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  48488413 taagggtattgtttaagcatctaaaagtagcaacttttgcattggaaattgta 48488465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 5081764 - 5081822
Alignment:
Q  164 ttgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgacttta 222  Q
    |||||||||||||||||||||||||||||| |||||||| |||||  ||||||||||||    
T  5081764 ttgtttaaacatctaaaagtagcaacttttacattgaaatttgtagggttatgacttta 5081822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 37869720 - 37869781
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    |||||||||  || ||||||||||||||||||||||||||||||||  ||||||||||||||    
T  37869720 attgtttaagtatataaaagtagcaacttttgcattgaaaattgtacggttatgactttaac 37869781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 28646609 - 28646677
Alignment:
Q  156 taagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    ||||| |||||||||| ||| ||||||||||||||||| ||||| ||||||||  ||||||||||||||    
T  28646609 taaggatattgtttaagcatataaaagtagcaacttttacattggaaattgtacggttatgactttaac 28646677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 42252147 - 42252083
Alignment:
Q  94 aataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactctaa 158  Q
    |||||||||||||||||||||||| |||||| ||||||||||| |||||||| | ||| ||||||    
T  42252147 aataggagtacctattaggtactatatcttaaatggtgaagacctcaccattatagatgctctaa 42252083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 28514760 - 28514709
Alignment:
Q  157 aagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  28514760 aagggcattgtttaagcatctaaaagtagcaacttttgcattggaaattgta 28514709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 10625072 - 10625006
Alignment:
Q  153 ctctaagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgact 219  Q
    ||||||||| ||||||| | ||| ||||||||| ||||||||||||||||||||||  |||||||||    
T  10625072 ctctaagggcattgtttcagcatataaaagtagaaacttttgcattgaaaattgtacggttatgact 10625006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 30833720 - 30833783
Alignment:
Q  4 atttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgg 69  Q
    ||||| ||||||||||||||||||||||||||||  ||||||||| ||| ||||||| ||||||||    
T  30833720 atttaaattccaccactaacatattattttaata--aaaaagtgtatggggaccacttaaagatgg 30833783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 25119943 - 25120004
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    ||||||||| ||| ||||||||||||||||||||||  ||||||||| ||||| ||||||||    
T  25119943 attgtttaagcatataaaagtagcaacttttgcattataaattgtatggttataactttaac 25120004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 31191496 - 31191427
Alignment:
Q  155 ctaagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||| |||||| |  ||||| ||||||||    
T  31191496 ctaagggcattgtttaagcatctaaaagtagcaacttttacattggaaattgcacggttataactttaac 31191427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 45618450 - 45618508
Alignment:
Q  165 tgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaa 223  Q
    ||||||| ||| || |||||||||||||||||||||||||||||  ||| |||||||||    
T  45618450 tgtttaagcatatagaagtagcaacttttgcattgaaaattgtaccgttgtgactttaa 45618508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 8584031 - 8584098
Alignment:
Q  153 ctctaagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgacttt 221  Q
    ||||||||| ||||||||| || |||||| ||||||||||||||||| ||||||| | ||||| |||||    
T  8584031 ctctaaggggattgtttaagcaactaaaa-tagcaacttttgcattggaaattgtttggttataacttt 8584098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 40198950 - 40199021
Alignment:
Q  154 tctaagggtattgtttaaacatctaaaagtagcaa-cttttgcattgaaaattgtattgttatgactttaac 224  Q
    |||||||| ||||||||| ||||||||||||||||  ||||||||||  |||||||| ||||| ||| ||||    
T  40198950 tctaagggcattgtttaagcatctaaaagtagcaattttttgcattgggaattgtatggttataactctaac 40199021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 43803427 - 43803381
Alignment:
Q  162 tattgtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    |||||||||| |||||||||| | |||||||| ||||||||||||||    
T  43803427 tattgtttaagcatctaaaagcaacaacttttacattgaaaattgta 43803381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 5355817 - 5355761
Alignment:
Q  100 agtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactct 156  Q
    |||||||||||| |||||| ||||| ||||||||||  |||| ||||||||| ||||    
T  5355817 agtacctattagttactaggtcttaaatggtgaagatctcacgattgtggatgctct 5355761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 45662229 - 45662297
Alignment:
Q  156 taagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    |||||||||||||||| ||||||||||||  || ||||  |||| |||||| |  ||||||||||||||    
T  45662229 taagggtattgtttaagcatctaaaagtaataatttttatattggaaattgcacggttatgactttaac 45662297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 33726987 - 33727071
Alignment:
Q  1 ctcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaa--agatgggggtcttaagttagac 85  Q
    |||||||| ||||||||||||||||||||||||||||| |||||  |||||| ||||||||||  ||||||||||||||||||||||    
T  33726987 ctcatttacattccaccactaacatattattttaataaaaaaaa--gtgtggggaccactaaaagagatgggggtcttaagttagac 33727071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 35616969 - 35616890
Alignment:
Q  5 tttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagac 85  Q
    |||| ||||||| ||||| ||| ||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  35616969 tttacattccactactaatataatattttaataa-aaaaagtgtgtgggaaccactaaaagatgggggtcttaagttagac 35616890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 13984223 - 13984286
Alignment:
Q  141 ccattgtggatactctaagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaat 204  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||| ||||    
T  13984223 ccattgtggatgctctaacggtattgtttaaacatctaaaagtagcaacttttacattggaaat 13984286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 32827292 - 32827206
Alignment:
Q  1 ctcatttatattccaccactaacatattattttaata--agaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagacc 86  Q
    |||||||| |||||| || ||||||| ||||||||||  | ||||||||||||||||||||| |||||| ||||||||||||||||||    
T  32827292 ctcatttacattccatcaataacataatattttaatataaaaaaaagtgtgtggagaccactgaaagat-ggggtcttaagttagacc 32827206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 37297089 - 37297041
Alignment:
Q  160 ggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  37297089 ggtattgcttaaccatctaaaagtagcaacttttgcattgaaaattgta 37297041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 33727104 - 33727162
Alignment:
Q  90 ccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtg 148  Q
    ||||||| ||||||||||||||||||||  | ||| |||||||||||||||||||||||    
T  33727104 ccacaatgggagtacctattaggtactatgttttaaatggtgaagacttcaccattgtg 33727162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 894895 - 894834
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    ||||||||| ||||||||||||||||||||||  ||||||||||||   |||||||||||||    
T  894895 attgtttaagcatctaaaagtagcaacttttgtgttgaaaattgtacgattatgactttaac 894834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 3831383 - 3831444
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    ||||||||| ||||||||||||| || |||||||||| ||||||||  ||||||||||||||    
T  3831383 attgtttaagcatctaaaagtagaaatttttgcattggaaattgtacagttatgactttaac 3831444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 32213634 - 32213581
Alignment:
Q  156 taagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtat 209  Q
    |||||||||||||||| ||| ||||||||| || ||||||||||||||||||||    
T  32213634 taagggtattgtttaagcatttaaaagtagtaatttttgcattgaaaattgtat 32213581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 10040525 - 10040473
Alignment:
Q  155 ctaagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgt 207  Q
    ||||||| ||||||||| ||||||||||||| ||||||||||||| |||||||    
T  10040525 ctaagggcattgtttaagcatctaaaagtagtaacttttgcattggaaattgt 10040473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 36563973 - 36563922
Alignment:
Q  157 aagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    ||||| ||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  36563973 aagggcattgtttaagcatttaaaagtagcaacttttacattgaaaattgta 36563922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 14104303 - 14104341
Alignment:
Q  168 ttaaacatctaaaagtagcaacttttgcattgaaaattg 206  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  14104303 ttaagcatctaaaagtagcaacttttgcattgaaaattg 14104341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 42410197 - 42410239
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaatt 205  Q
    ||||||||| ||||||||||||||||||||||||||| |||||    
T  42410197 attgtttaatcatctaaaagtagcaacttttgcattggaaatt 42410239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 13208119 - 13208058
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    ||||||||| |||||||||||| ||||||||| |||| ||||| |||  |||||||||||||    
T  13208119 attgtttaagcatctaaaagtaacaacttttgaattggaaattatatgattatgactttaac 13208058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 19512790 - 19512733
Alignment:
Q  102 tacctattaggtactagatcttagatggtgaagacttcaccattgtggatactctaag 159  Q
    |||||||||||||  |||||||| ||||||||||| || ||||||||||| |||||||    
T  19512790 tacctattaggtatcagatcttaaatggtgaagacctcgccattgtggatgctctaag 19512733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 46592327 - 46592265
Alignment:
Q  1 ctcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaa 64  Q
    |||| ||| |||| |||||||||||||||||||||||| ||||| |||||||  ||||||||||    
T  46592327 ctcacttacattcaaccactaacatattattttaataa-aaaaaatgtgtgggaaccactaaaa 46592265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 196
Target Start/End: Complemental strand, 51049946 - 51049903
Alignment:
Q  153 ctctaagggtattgtttaaacatctaaaagtagcaacttttgca 196  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||    
T  51049946 ctctaagggcattgtttaagcatataaaagtagcaacttttgca 51049903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 5300334 - 5300263
Alignment:
Q  98 ggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactctaagggtattgtttaa 171  Q
    |||||||||||||||||| || |||||  | |||||||| |||||||||||||| |||||| |  |||||||||    
T  5300334 ggagtacctattaggtacaaggtctta--ttgtgaagacctcaccattgtggatgctctaaagacattgtttaa 5300263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 32827174 - 32827108
Alignment:
Q  90 ccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactct 156  Q
    ||||||| | ||||| |||||| |||||| ||||| ||||||||||| ||||||| |||||| ||||    
T  32827174 ccacaatggaagtacatattagatactaggtcttaaatggtgaagacctcaccatggtggatgctct 32827108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 34038799 - 34038844
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    ||||||||| ||||||||||||| |||||||||| || ||||||||    
T  34038799 attgtttaagcatctaaaagtagtaacttttgcaatggaaattgta 34038844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 38067713 - 38067774
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    ||||||||| ||||||||||||  |||||||| |||||||||||||   | |||||||||||    
T  38067713 attgtttaagcatctaaaagtattaacttttgtattgaaaattgtacgatgatgactttaac 38067774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 40678997 - 40678914
Alignment:
Q  1 ctcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagacc 86  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||  | |||||||||||||| ||| ||||||||||||||    
T  40678997 ctcatttacattccaccactaacatattattttaataa-aaaaagtgtgcagggaccactaaaagat-gggatcttaagttagacc 40678914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 6107024 - 6106956
Alignment:
Q  90 ccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactctaa 158  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||| ||| ||||||    
T  6107024 ccacaatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccattgtagatgctctaa 6106956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 8644330 - 8644262
Alignment:
Q  88 tcccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactct 156  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||| ||| ||||    
T  8644330 tcccacaatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccattgtagatgctct 8644262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 8644442 - 8644361
Alignment:
Q  2 tcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagacc 86  Q
    ||||||| ||||||||||||  ||||||||||||||  ||||||||||||  ||||||| |||||| ||||||||||||||||||    
T  8644442 tcatttaaattccaccactattatattattttaata--aaaaagtgtgtgaggaccacttaaagat-ggggtcttaagttagacc 8644361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 31511530 - 31511590
Alignment:
Q  99 gagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactctaag 159  Q
    |||||||||||||||||||||||||| ||||||||||  |||||||||| ||| |||||||    
T  31511530 gagtacctattaggtactagatcttaaatggtgaagatctcaccattgtagatgctctaag 31511590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 33015582 - 33015634
Alignment:
Q  156 taagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||| |||||    
T  33015582 taagggcattgtttaagcatctaaaagtagcaacttttgcattgaaagttgta 33015634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 31511421 - 31511491
Alignment:
Q  14 caccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagaccct 88  Q
    ||||||||||||  ||||||||||| ||||||||||||| |||||||||||||| ||| ||||||||||||||||    
T  31511421 caccactaacat--tattttaataa-aaaaagtgtgtggggaccactaaaagat-gggatcttaagttagaccct 31511491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 67589 - 67669
Alignment:
Q  2 tcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagacc 86  Q
    ||||||| ||||||||||||||||||||||||||||  ||||||||| ||  | ||||| ||||||  |||||||||||||||||    
T  67589 tcatttaaattccaccactaacatattattttaata--aaaaagtgtatgtgggccacttaaagat--gggtcttaagttagacc 67669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 38573420 - 38573362
Alignment:
Q  150 atactctaagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    ||||| ||||||||||||||||  |||||||||||| ||||||||||||| ||||||||    
T  38573420 atactataagggtattgtttaagtatctaaaagtagtaacttttgcattggaaattgta 38573362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 7207011 - 7206932
Alignment:
Q  2 tcatttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagacc 86  Q
    ||||||| ||||||| ||||||||||||||||||||| ||||||||||||| ||  ||| |||||| ||||||||||||||||||    
T  7207011 tcatttaaattccactactaacatattattttaataa-aaaaagtgtgtgg-ga--acttaaagat-ggggtcttaagttagacc 7206932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 7642715 - 7642670
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||    
T  7642715 attgtttaaacatctaaaattagcaacttttgcattgtaaattgta 7642670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 13018612 - 13018559
Alignment:
Q  155 ctaagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    ||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||    
T  13018612 ctaagggcattgtttaagcatataaaagtagcaacttttgcattggaaattgta 13018559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 40678874 - 40678815
Alignment:
Q  100 agtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactctaag 159  Q
    ||||||||||||||||||||||||| |||||||| |  |||| ||||||||| |||||||    
T  40678874 agtacctattaggtactagatcttaaatggtgaataactcactattgtggatgctctaag 40678815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 44395769 - 44395719
Alignment:
Q  158 agggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    |||| ||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  44395769 agggcattgtttaaacatttaaaagtagcaacttttacattggaaattgta 44395719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 23518323 - 23518270
Alignment:
Q  155 ctaagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgta 208  Q
    |||||||  |||||||| ||||||||| ||| ||||||||||||||||||||||    
T  23518323 ctaagggcgttgtttaagcatctaaaaatagtaacttttgcattgaaaattgta 23518270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 7206898 - 7206854
Alignment:
Q  92 acaataggagtacctattaggtactagatcttagatggtgaagac 136  Q
    ||||||||||||||||||||||||||| ||||| || ||||||||    
T  7206898 acaataggagtacctattaggtactaggtcttaaatagtgaagac 7206854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 67697 - 67765
Alignment:
Q  88 tcccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactct 156  Q
    |||||| |||| |||||||||||  |||||| ||||| |||||||| || |||||||| | ||||||||    
T  67697 tcccacgatagaagtacctattaactactaggtcttaaatggtgaaaacctcaccattatagatactct 67765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 40229796 - 40229852
Alignment:
Q  100 agtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactct 156  Q
    |||||||||||| || || |||||| ||||||||||||| |||||||| ||| ||||    
T  40229796 agtacctattagatattaaatcttaaatggtgaagactttaccattgtagatgctct 40229852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 44104037 - 44103981
Alignment:
Q  101 gtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactcta 157  Q
    ||||||||||||||| |  ||||| ||||||||||| |||||| ||||||| |||||    
T  44104037 gtacctattaggtaccaagtcttaaatggtgaagacctcaccaatgtggatgctcta 44103981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 26977 - 26898
Alignment:
Q  4 atttatattccaccactaacatattattttaataagaaaaagtgtgtggagaccactaaaagatgggggtcttaagttagac 85  Q
    ||||| ||||||||| ||||||||||||| ||||| ||||  ||| ||| ||||||| ||||||| ||||||||||||||||    
T  26977 atttaaattccaccattaacatattatttgaataaaaaaa--tgtatggggaccacttaaagatgagggtcttaagttagac 26898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 26865 - 26799
Alignment:
Q  90 ccacaataggagtacctattaggtactagatcttagatggtgaagacttcaccattgtggatactct 156  Q
    |||||||||||||||||||||  || ||||||||| ||| ||||||| |||||||||| ||| ||||    
T  26865 ccacaataggagtacctattaaatattagatcttaaatgatgaagacctcaccattgtagatgctct 26799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 171590 - 171651
Alignment:
Q  163 attgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||   ||| ||||||||||    
T  171590 attgtttaagcatctaaaagtagcaacttttgcattaaaaattgttcagttgtgactttaac 171651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 10148 - 10205
Alignment:
Q  102 tacctattaggtactagatcttagatggtgaagacttcaccattgtggatactctaag 159  Q
    |||||||||||||  |||||||| ||||||||||| || ||||||||||| |||||||    
T  10148 tacctattaggtatcagatcttaaatggtgaagacctcgccattgtggatgctctaag 10205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 433867 - 433936
Alignment:
Q  153 ctctaagggtattgtttaaacatctaaaagtagcaacttttgcattgaaaattgtattgttatgactttaac 224  Q
    |||||||| |||||||||| ||| |||||||||||||||| | |||| ||||||||   |||||||||||||    
T  433867 ctctaaggatattgtttaagcatataaaagtagcaactttcgtattgtaaattgta--attatgactttaac 433936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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