View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_79 (Length: 239)
Name: NF9751_low_79
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_79 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 39441103 - 39440881
Alignment:
| Q |
1 |
ttcaatgtacacagaaagaaagaatatggcaccaagatttgccacttagaaatttcatgaattttccacccttgactcaacccaagcttcagattgggta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39441103 |
ttcaatgtacacagaaagaaagaatatggcaccaagatttgccacttagaaatttcatgaattttccacccttgactcaacccaagcttcagattgggta |
39441004 |
T |
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| Q |
101 |
gtcttccacatgctttacttcctcctcagctgaatttgtagtttataatgtatcttgctctctacgagtttggaattggttttcccacagcttaccagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39441003 |
gtcttccacatgctttacttcctcctcagctgaatttgtagtttataatgtatcttgctctccacgagtttggaattggttttcccacagcttaccagac |
39440904 |
T |
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| Q |
201 |
ttcccaagtgagagaatcagatc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
39440903 |
ttcccaagtgagagaatcagatc |
39440881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5964609 - 5964680
Alignment:
| Q |
1 |
ttcaatgtacacagaaagaaagaatatggcaccaagatttgccacttagaaatttcatgaattttccaccct |
72 |
Q |
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||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
5964609 |
ttcaatgtacacaaaaagaaagaatatgacaccaatatttgccacttagaaatttcatgaattttcctccct |
5964680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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