View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_8 (Length: 542)
Name: NF9751_low_8
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Complemental strand, 44089339 - 44088910
Alignment:
| Q |
18 |
aattatgccaccgacgcttcacattgaatgtttgtccattgtgcaacaccgacatataatattacattaaattatttaattgttttaaattattatcagt |
117 |
Q |
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| T |
44089339 |
aattatgccaccgacgcttcacattgaatgtttgtccattgtgtaacaccggcatatgatattacattaaattatttaattgttttaaattattatcaat |
44089240 |
T |
|
| Q |
118 |
gtcaacgtggcagtgttgtgtctatatcattacttcgtaacttagtagtcatcatcgttatctaataaagattttctggnnnnnnntaatcatatgtacc |
217 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44089239 |
gtcaacgtgtcattgttgtgtctatatcattacttcgtaacttagtagccatcatcgttatctaataaagattttctggaaaaaaataatcatatgtacc |
44089140 |
T |
|
| Q |
218 |
tgcttttatcattgctgttgcttctgctagtgctactactactagtattttgtctatcttcactgaaaaatcttttgattctccattctttatctttttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44089139 |
tgcttttatcattgctgttgcttctgctagtgctactactactagtattttgtctatcttcactgaaaaatcttttgattctccattctttatctttttg |
44089040 |
T |
|
| Q |
318 |
ttctacctcagagccattttgtactttagtagtcttcttcatccaatcaaaagaaattggaaagaacatcttcaataggaaggtttcactgtccatgctt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44089039 |
ttctacctcagagccattttgtactttagtagtcttcttcatccaatcaaaagaaattggaaagaacatcttcaataggaaggtttcactgtccatgctt |
44088940 |
T |
|
| Q |
418 |
tcaactcttaacattttaccatgtctattg |
447 |
Q |
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| T |
44088939 |
tcaactcttaacattttaccatgtctattg |
44088910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 532
Target Start/End: Complemental strand, 44088860 - 44088825
Alignment:
| Q |
497 |
gttgaggttgttgaaatttactatacacaggttctg |
532 |
Q |
| |
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| T |
44088860 |
gttgaggttgttgaaatttactatacactggttctg |
44088825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 46801772 - 46801806
Alignment:
| Q |
104 |
aaattattatcagtgtcaacgtggcagtgttgtgt |
138 |
Q |
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| T |
46801772 |
aaattattatcagtgtcaacgtgtcagtgttgtgt |
46801806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 43328508 - 43328446
Alignment:
| Q |
79 |
ttacattaaattatttaattgttttaaattattatcagtgtcaacgtggcagtgttgtgtcta |
141 |
Q |
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| T |
43328508 |
ttacattaaattatttcattttctcaaattattataagtgtcaacgtgtcagtgttgtgtcta |
43328446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 26462662 - 26462710
Alignment:
| Q |
78 |
attacattaaattatttaattgttttaaattattatcagtgtcaacgtg |
126 |
Q |
| |
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|||||||| |||||||| ||| | ||||||||||||||||||| ||||| |
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|
| T |
26462662 |
attacattcaattatttcattttcttaaattattatcagtgtcgacgtg |
26462710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 982870 - 982822
Alignment:
| Q |
78 |
attacattaaattatttaattgttttaaattattatcagtgtcaacgtg |
126 |
Q |
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|||||||||||||| |||||| ||| || |||||||||||||||||||| |
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| T |
982870 |
attacattaaattagttaattttttgaatttattatcagtgtcaacgtg |
982822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 15969395 - 15969347
Alignment:
| Q |
78 |
attacattaaattatttaattgttttaaattattatcagtgtcaacgtg |
126 |
Q |
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||||||||||||||| | ||| ||| ||||||||||||||||| ||||| |
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| T |
15969395 |
attacattaaattatgttattttttaaaattattatcagtgtcgacgtg |
15969347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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