View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_83 (Length: 230)
Name: NF9751_low_83
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_83 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 26309533 - 26309730
Alignment:
| Q |
19 |
aaatccttcttgatgtgaccgatattttgacaaatgaagcatttgtattttgatttatcaaatcctttggaattggatttaaaccaagatttcttaccct |
118 |
Q |
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| T |
26309533 |
aaatccttcttgatgtgaccgatattatgacaaatgaagcatttgtattttgatttatcaaatcctttggaaatggatttaaaccaagatttcttaccct |
26309632 |
T |
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| Q |
119 |
tacaa-ttcctctactaccatttcttcctcttgacaaatttaagaattaacaatcttcaaccttcaagtcattaaatgtagttacctcattggttctc |
215 |
Q |
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| T |
26309633 |
tacaatttcctttactaccatttcttcctcttgacacatttaagaattaacaatcttcaaccttcaagtcattaaatgtcgttacctcattggttctc |
26309730 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 32428923 - 32428957
Alignment:
| Q |
46 |
tgacaaatgaagcatttgtattttgatttatcaaa |
80 |
Q |
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| T |
32428923 |
tgacaaatgaagcatttgtattttgatatatcaaa |
32428957 |
T |
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