View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9751_low_85 (Length: 222)
Name: NF9751_low_85
Description: NF9751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9751_low_85 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 39676033 - 39675842
Alignment:
| Q |
14 |
tttggtggttttcgcagcaatgtcagcaacttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaa |
113 |
Q |
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| T |
39676033 |
tttggtggttttcgcagcaatgtcagcaacttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccaaagaaagccgtaaggtagataaggcaa |
39675934 |
T |
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| Q |
114 |
gcaatgagggaaactagagcaagaatctcggagattgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaag |
205 |
Q |
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| T |
39675933 |
gcaatgagggaaactagagcaagaatctcggagattgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaag |
39675842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 48 - 205
Target Start/End: Complemental strand, 10866426 - 10866269
Alignment:
| Q |
48 |
tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga |
147 |
Q |
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| T |
10866426 |
tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga |
10866327 |
T |
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| Q |
148 |
ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaag |
205 |
Q |
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| T |
10866326 |
ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaag |
10866269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 10873879 - 10874036
Alignment:
| Q |
48 |
tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga |
147 |
Q |
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| T |
10873879 |
tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga |
10873978 |
T |
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| Q |
148 |
ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaag |
205 |
Q |
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| T |
10873979 |
ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaag |
10874036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 10878950 - 10879107
Alignment:
| Q |
48 |
tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga |
147 |
Q |
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| T |
10878950 |
tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga |
10879049 |
T |
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| Q |
148 |
ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaag |
205 |
Q |
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| T |
10879050 |
ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaag |
10879107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 10884021 - 10884178
Alignment:
| Q |
48 |
tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga |
147 |
Q |
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| T |
10884021 |
tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga |
10884120 |
T |
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| Q |
148 |
ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaag |
205 |
Q |
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| T |
10884121 |
ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaag |
10884178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 42 - 205
Target Start/End: Original strand, 10887942 - 10888105
Alignment:
| Q |
42 |
acttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatct |
141 |
Q |
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| T |
10887942 |
acttcgtcttcatcatcatcgtaatgaatgatgaaggcagtgccgaagaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatct |
10888041 |
T |
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| Q |
142 |
cggagattgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaag |
205 |
Q |
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| T |
10888042 |
cagagactgtgaggatgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaag |
10888105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 65 - 205
Target Start/End: Complemental strand, 10045975 - 10045835
Alignment:
| Q |
65 |
atgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggagattgtgaggacatggaga |
164 |
Q |
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| T |
10045975 |
atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga |
10045876 |
T |
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| Q |
165 |
ggtgtagaggttcggatcttttcacgccaccggttaagaag |
205 |
Q |
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| T |
10045875 |
ggtgtggaggttcggatcttctcacgccacctgtgaagaag |
10045835 |
T |
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