View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9752_high_7 (Length: 251)
Name: NF9752_high_7
Description: NF9752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9752_high_7 |
 | |
|
| [»] chr5 (7 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 39676324 - 39676084
Alignment:
| Q |
11 |
caaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccattggtaaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39676324 |
caaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccattggtaaa |
39676225 |
T |
|
| Q |
111 |
ccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39676224 |
ccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaa |
39676125 |
T |
|
| Q |
211 |
ttgatccagacaccactgcaccaacaacctcctcatcttcc |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39676124 |
ttgatccagacaccactgcaccaacaacctcctcatcttcc |
39676084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 10873545 - 10873785
Alignment:
| Q |
11 |
caaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccattggtaaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
10873545 |
caaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaatcgtaatcaaaaccttccatcggtaaa |
10873644 |
T |
|
| Q |
111 |
ccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaa |
210 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10873645 |
ccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgagtaagatggaa |
10873744 |
T |
|
| Q |
211 |
ttgatccagacaccactgcaccaacaacctcctcatcttcc |
251 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||| |||||| |
|
|
| T |
10873745 |
ttgatcctgacaccactgcactgacaacctcctcgtcttcc |
10873785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 10878616 - 10878856
Alignment:
| Q |
11 |
caaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccattggtaaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
10878616 |
caaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaatcgtaatcaaaaccttccatcggtaaa |
10878715 |
T |
|
| Q |
111 |
ccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaa |
210 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10878716 |
ccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgagtaagatggaa |
10878815 |
T |
|
| Q |
211 |
ttgatccagacaccactgcaccaacaacctcctcatcttcc |
251 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||| |||||| |
|
|
| T |
10878816 |
ttgatcctgacaccactgcactgacaacctcctcgtcttcc |
10878856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 10883687 - 10883927
Alignment:
| Q |
11 |
caaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccattggtaaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
10883687 |
caaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaatcgtaatcaaaaccttccatcggtaaa |
10883786 |
T |
|
| Q |
111 |
ccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaa |
210 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10883787 |
ccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgagtaagatggaa |
10883886 |
T |
|
| Q |
211 |
ttgatccagacaccactgcaccaacaacctcctcatcttcc |
251 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||| |||||| |
|
|
| T |
10883887 |
ttgatcctgacaccactgcactgacaacctcctcgtcttcc |
10883927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 10866760 - 10866520
Alignment:
| Q |
11 |
caaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccattggtaaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| || |||||||||||||| |||||| |
|
|
| T |
10866760 |
caaaggaccggcaacacccaccggaatctgaacaaaccctatcggcatctcgcaacactgtcctaatatagaattgtagtcaaaaccttccatcggtaaa |
10866661 |
T |
|
| Q |
111 |
ccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaa |
210 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10866660 |
ccttcaagtgaccttccggtaactctctccaccgcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgagtaagatggaa |
10866561 |
T |
|
| Q |
211 |
ttgatccagacaccactgcaccaacaacctcctcatcttcc |
251 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||| |||||| |
|
|
| T |
10866560 |
ttgatcctgacaccactgcactgacaacctcctcgtcttcc |
10866520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 10887605 - 10887845
Alignment:
| Q |
11 |
caaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccattggtaaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||| ||| |||||| |
|
|
| T |
10887605 |
caaaggaccggcaacacccaccggaatttgaacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaacctttcatcggtaaa |
10887704 |
T |
|
| Q |
111 |
ccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaa |
210 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| ||||||||||||||| || ||||| ||||||||||| |||||||| ||||| |||||||| |||| |
|
|
| T |
10887705 |
ccttcaagtgaccttccggtaaccctctccactgcttggttcctaatctttgctgcacgacggcaatctccgagcttcgactcaagggagtaagaaggaa |
10887804 |
T |
|
| Q |
211 |
ttgatccagacaccactgcaccaacaacctcctcatcttcc |
251 |
Q |
| |
|
||||||| || ||||||||||| |||||||| || |||||| |
|
|
| T |
10887805 |
ttgatcccgataccactgcaccgacaacctcttcgtcttcc |
10887845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 10046380 - 10046140
Alignment:
| Q |
11 |
caaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccattggtaaa |
110 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| ||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10046380 |
caaaggtccggcaactcccaccggaatctgaacaaatcctatcggcatctcacaacactgtcctaatatcgaatcataatcaaaaccttccattggtaaa |
10046281 |
T |
|
| Q |
111 |
ccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaa |
210 |
Q |
| |
|
|| |||||| |||| |||||||||||||| |||||||| | ||| | || |||||| ||||||||| || || |||||||||||||| || |||| |
|
|
| T |
10046280 |
cccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgtttgcaatctccgagttttgattcaagcgagtatgacggaa |
10046181 |
T |
|
| Q |
211 |
ttgatccagacaccactgcaccaacaacctcctcatcttcc |
251 |
Q |
| |
|
||| || | ||||| |||| |||||||| ||||||||| |
|
|
| T |
10046180 |
ttgtaccggttaccaccgcacggacaacctcgtcatcttcc |
10046140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 30709588 - 30709688
Alignment:
| Q |
15 |
ggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccattggtaaacctt |
114 |
Q |
| |
|
||||| |||||||| |||||||| |||||||||||||| |||||||| ||||| ||||| ||||| ||||| |||||||||||||||| |||||||||| |
|
|
| T |
30709588 |
ggacccgcaacaccaaccggaatttgaacaaaccctatcggcatctcacaacactgtcccaatatcgaatcgtaatcaaaaccttccaacggtaaacctt |
30709687 |
T |
|
| Q |
115 |
c |
115 |
Q |
| |
|
| |
|
|
| T |
30709688 |
c |
30709688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University