View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9752_low_1 (Length: 454)

Name: NF9752_low_1
Description: NF9752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9752_low_1
NF9752_low_1
[»] chr4 (23 HSPs)
chr4 (159-433)||(23868733-23869007)
chr4 (155-454)||(23453354-23453653)
chr4 (159-439)||(24307224-24307504)
chr4 (155-432)||(23408544-23408821)
chr4 (159-436)||(23885828-23886105)
chr4 (155-435)||(23402071-23402351)
chr4 (159-437)||(23415708-23415986)
chr4 (159-437)||(26832736-26833014)
chr4 (159-437)||(26434025-26434303)
chr4 (159-439)||(26435805-26436085)
chr4 (159-433)||(34662044-34662318)
chr4 (11-121)||(24307076-24307186)
chr4 (11-124)||(26832588-26832701)
chr4 (15-115)||(23401931-23402031)
chr4 (248-380)||(23451788-23451920)
chr4 (11-124)||(26433877-26433990)
chr4 (11-124)||(26435657-26435770)
chr4 (15-115)||(23408861-23408961)
chr4 (15-124)||(23416018-23416127)
chr4 (15-124)||(23868589-23868698)
chr4 (11-124)||(23885680-23885793)
chr4 (14-118)||(34662359-34662463)
chr4 (15-112)||(23453696-23453793)
[»] chr1 (6 HSPs)
chr1 (159-429)||(41670401-41670671)
chr1 (156-415)||(40795767-40796026)
chr1 (307-437)||(33216594-33216724)
chr1 (159-409)||(29391467-29391717)
chr1 (354-439)||(45576399-45576484)
chr1 (251-287)||(33216558-33216594)
[»] chr7 (3 HSPs)
chr7 (307-437)||(47317431-47317561)
chr7 (159-397)||(40180309-40180547)
chr7 (251-287)||(47317395-47317431)
[»] chr2 (2 HSPs)
chr2 (342-394)||(14715433-14715485)
chr2 (15-63)||(14715372-14715420)
[»] chr8 (1 HSPs)
chr8 (159-284)||(29684701-29684826)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 159 - 433
Target Start/End: Original strand, 23868733 - 23869007
Alignment:
Q  159 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 258  Q
    |||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23868733 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 23868832  T
Q  259 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 358  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23868833 atatcttcgagaaacttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagacttgt 23868932  T
Q  359 tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagat 433  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23868933 tcttcctggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagat 23869007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 155 - 454
Target Start/End: Complemental strand, 23453653 - 23453354
Alignment:
Q  155 tgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc 254  Q
    |||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||    
T  23453653 tgtagaaacatacaagatctacatcttcaaagttctgaatcatgttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatc 23453554  T
Q  255 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23453553 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagtc 23453454  T
Q  355 ttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttgagagaaaatcggtggcct 454  Q
    ||||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||| |||||||||||||| ||||||||||||||||||||    
T  23453453 ttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttactagttcttagatctgagagaaaatcggtggcct 23453354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 159 - 439
Target Start/End: Original strand, 24307224 - 24307504
Alignment:
Q  159 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 258  Q
    ||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24307224 gaaacatacaagatctatatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 24307323  T
Q  259 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 358  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24307324 atatcttcgagaaactagctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagacttgt 24307423  T
Q  359 tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttgaga 439  Q
    |||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||    
T  24307424 tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcactagttcttagatttgaga 24307504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 155 - 432
Target Start/End: Complemental strand, 23408821 - 23408544
Alignment:
Q  155 tgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc 254  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||    
T  23408821 tgtagaaacatacaagatctacatcttcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagcgatgggtatcatgaacagtttcatc 23408722  T
Q  255 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  23408721 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcagac 23408622  T
Q  355 ttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttaga 432  Q
    ||||||||||||| ||||||||||||||||||||||||||||| || || |||||||||||||| ||||| |||||||    
T  23408621 ttgttcttcctggagaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttactagctcttaga 23408544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 159 - 436
Target Start/End: Original strand, 23885828 - 23886105
Alignment:
Q  159 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 258  Q
    |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  23885828 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg 23885927  T
Q  259 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23885928 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggcttgt 23886027  T
Q  359 tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttg 436  Q
    |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||| |||||||||||||||||    
T  23886028 tcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagatttg 23886105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 155 - 435
Target Start/End: Original strand, 23402071 - 23402351
Alignment:
Q  155 tgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc 254  Q
    |||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||    
T  23402071 tgtagaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatc 23402170  T
Q  255 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23402171 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggc 23402270  T
Q  355 ttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagattt 435  Q
    |||||||||||||||||||||||||||||||||| || || ||||| ||||||||||| ||||| ||||||||||||||||    
T  23402271 ttgttcttcctggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttactagttcttagattt 23402351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 159 - 437
Target Start/End: Complemental strand, 23415986 - 23415708
Alignment:
Q  159 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 258  Q
    |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  23415986 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg 23415887  T
Q  259 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23415886 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 23415787  T
Q  359 tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttga 437  Q
    |||||||||||||||||||||||||||||||||||| || || || |||||||||||||| ||||| ||||||| ||||    
T  23415786 tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttactagctcttagacttga 23415708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 159 - 437
Target Start/End: Original strand, 26832736 - 26833014
Alignment:
Q  159 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 258  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  26832736 gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 26832835  T
Q  259 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 358  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  26832836 atatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt 26832935  T
Q  359 tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttga 437  Q
    ||| || ||||||||||||||||||||||||||||| || || || ||||| |||||||| ||||||||||||||||||    
T  26832936 tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttga 26833014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 159 - 437
Target Start/End: Original strand, 26434025 - 26434303
Alignment:
Q  159 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 258  Q
    |||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  26434025 gaaacatacaagatctacatcttcaaggttctgaaacaagttcatccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 26434124  T
Q  259 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 358  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  26434125 atatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt 26434224  T
Q  359 tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttga 437  Q
    ||| || ||||||||||||||||||||||||||||| || || || ||||| |||||||| ||||||||||||||||||    
T  26434225 tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagatttga 26434303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 159 - 439
Target Start/End: Original strand, 26435805 - 26436085
Alignment:
Q  159 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 258  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  26435805 gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 26435904  T
Q  259 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 358  Q
    ||||||||||||| ||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  26435905 atatcttcgagaaactcactcaagaatcttccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt 26436004  T
Q  359 tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttgaga 439  Q
    ||| || ||||||||||||||||||| ||||||||| || || || ||||| |||||||| || |||||||||||||||||    
T  26436005 tctgcccggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttaccagttcttagatttgaga 26436085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 159 - 433
Target Start/End: Complemental strand, 34662318 - 34662044
Alignment:
Q  159 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 258  Q
    ||||| |||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  34662318 gaaacctacaagatctacatcttcaaggttctgaaacaagttcaccctgacattggtatctcaagcaaagccatgggtattatgaacagtttcatcaatg 34662219  T
Q  259 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 358  Q
    |||||||||||||||| ||||||||||| |||||||||||  | || ||||||||||| || || ||||| ||||||||||||||||| || || |||||    
T  34662218 atatcttcgagaagctcgctcaagaatcttccagacttgcaaggtataacaagaagccgacgataacttcgagggaaattcagactgctgttaggcttgt 34662119  T
Q  359 tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagat 433  Q
    ||||||||| |||||||| ||||||||||| ||||| || || |||||||| || ||||| || |||||||||||    
T  34662118 tcttcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttacaagttcttagat 34662044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 24307076 - 24307186
Alignment:
Q  11 agcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  24307076 agcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaggctcctgctgagaagaagccaaaggcaggaaagaagctaccaaaggaaggt 24307175  T
Q  111 ggttcagctgc 121  Q
    ||||| |||||    
T  24307176 ggttccgctgc 24307186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 26832588 - 26832701
Alignment:
Q  11 agcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggt 110  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  26832588 agcagagaagaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccaaaggccggaaagaagcttccaaaggaaggt 26832687  T
Q  111 ggttcagctgccgg 124  Q
    |||||||| |||||    
T  26832688 ggttcagccgccgg 26832701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 23401931 - 23402031
Alignment:
Q  15 gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggtt 114  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23401931 gagaagaaacccgctgaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggtt 23402030  T
Q  115 c 115  Q
    |    
T  23402031 c 23402031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 248 - 380
Target Start/End: Complemental strand, 23451920 - 23451788
Alignment:
Q  248 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 347  Q
    ||||||||| |||||||| |||||||| ||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  23451920 tttcatcaacgatatctttgagaagctcgctcaagaatactccagacttgctcgctacaacaagaagccaacaatcacttcaagggaaattcagaccgca 23451821  T
Q  348 gtcagacttgttcttcctggtgaattggccaag 380  Q
    ||||| |||||||| || |||||||||||||||    
T  23451820 gtcaggcttgttctgcccggtgaattggccaag 23451788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 26433877 - 26433990
Alignment:
Q  11 agcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggt 110  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||    
T  26433877 agcagagaagaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggt 26433976  T
Q  111 ggttcagctgccgg 124  Q
    |||||||| |||||    
T  26433977 ggttcagccgccgg 26433990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 26435657 - 26435770
Alignment:
Q  11 agcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggt 110  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||    
T  26435657 agcagagaagaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggt 26435756  T
Q  111 ggttcagctgccgg 124  Q
    |||||||| |||||    
T  26435757 ggttcagccgccgg 26435770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 23408961 - 23408861
Alignment:
Q  15 gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggtt 114  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23408961 gagaagaaacccgctgaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagcccaaggcaggaaagaagctaccaaaggaaggtggtt 23408862  T
Q  115 c 115  Q
    |    
T  23408861 c 23408861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 23416127 - 23416018
Alignment:
Q  15 gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggtt 114  Q
    ||||||||||| || |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||    
T  23416127 gagaagaaaccagctgaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggcagggaagaagctaccaaaggaaggtggtt 23416028  T
Q  115 cagctgccgg 124  Q
    ||||||||||    
T  23416027 cagctgccgg 23416018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 23868589 - 23868698
Alignment:
Q  15 gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggtt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| ||||||||||||||||    
T  23868589 gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaagcttccaaaggaaggtggtt 23868688  T
Q  115 cagctgccgg 124  Q
    |||| |||||    
T  23868689 cagccgccgg 23868698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 23885680 - 23885793
Alignment:
Q  11 agcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggt 110  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| ||||||||||||    
T  23885680 agcagagaagaaaccagctgaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaagcttccaaaggaaggt 23885779  T
Q  111 ggttcagctgccgg 124  Q
    |||||||| |||||    
T  23885780 ggttcagccgccgg 23885793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 34662463 - 34662359
Alignment:
Q  14 agagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggt 113  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| | |||    
T  34662463 agagaagaaacctgcagaggagaagaaatccaccgtcgccgagaaagctccggcagagaagaagccaaaggccggaaagaagcttccaaaggaaagcggt 34662364  T
Q  114 tcagc 118  Q
    |||||    
T  34662363 tcagc 34662359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 23453793 - 23453696
Alignment:
Q  15 gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtgg 112  Q
    ||||||||||| || |||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| || |||||||||||    
T  23453793 gagaagaaacctgctgaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggctggaaagaagcttcctaaggaaggtgg 23453696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 159 - 429
Target Start/End: Original strand, 41670401 - 41670671
Alignment:
Q  159 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 258  Q
    ||||| |||||||||||||| ||||| || || || || ||||| || |||||||||||||||||||| || ||||| || |||||||| ||||||||||    
T  41670401 gaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcatcaatg 41670500  T
Q  259 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 358  Q
    ||||||| |||||||| ||||| ||||| |||||||||||  | |||||||||||||| |||||||||||  |||| || |||||||| ||  | |||||    
T  41670501 atatctttgagaagctcgctcaggaatcttccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgtcttgt 41670600  T
Q  359 tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttctt 429  Q
    ||| || |||||| | || ||||||||||| ||||| ||||| || ||||| || || |||||||| ||||    
T  41670601 tctccccggtgaacttgctaagcatgctgtctctgagggaaccaaggctgttaccaaattcactagctctt 41670671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 156 - 415
Target Start/End: Original strand, 40795767 - 40796026
Alignment:
Q  156 gtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatca 255  Q
    |||||||| |||||||||||||| ||||| || || || || ||||| || |||||||| ||||| ||||| || ||||| || ||||||||||||||||    
T  40795767 gtagaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggaatctccagcaaggctatggggatcatgaacagtttcatca 40795866  T
Q  256 atgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagact 355  Q
    |||| ||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||| || || ||||| ||  | || ||||||||||| ||  | ||    
T  40795867 atgacatctttgagaagctcgctcaggaatcatccagactcgctcgctacaacaagaaacctaccatcacctctcgtgagattcagactgctgttcgtct 40795966  T
Q  356 tgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaa 415  Q
     |||||||| || ||| | |||||||| ||||| || || ||||| ||||| || |||||    
T  40795967 cgttcttcccggcgaacttgccaagcacgctgtctccgagggaaccaaagcagtcactaa 40796026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 307 - 437
Target Start/End: Original strand, 33216594 - 33216724
Alignment:
Q  307 acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagc 406  Q
    |||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || || || ||    
T  33216594 acaagaagccaacaatcacttcaaggaaaattcaaactgctgtcagacttgttcttcttggtgaattggccaaacatgctgtttctgagggtaccaaggc 33216693  T
Q  407 tgtgactaagttcactagttcttagatttga 437  Q
    |||||| ||||| ||| ||||||| ||||||    
T  33216694 tgtgaccaagtttactggttcttaaatttga 33216724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 159 - 409
Target Start/End: Original strand, 29391467 - 29391717
Alignment:
Q  159 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 258  Q
    ||||| || ||||| ||||| ||||| || || ||||| ||||| || || || ||||| ||   |||||| ||||| || |||||||||||||||||||    
T  29391467 gaaacctataagatttacatcttcaaggttctcaaacaggttcatcctgatataggtatttcttccaaagctatggggattatgaacagtttcatcaatg 29391566  T
Q  259 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 358  Q
    ||||||| ||||| || ||||| ||| | || ||| | ||||||||||||||||| || || || || || ||||| ||||| || || ||  |  | ||    
T  29391567 atatctttgagaaactcgctcaggaagcttctagattggctcgttacaacaagaaaccgacgattacgtcgagggagattcaaacggctgtgcgtttggt 29391666  T
Q  359 tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgt 409  Q
    |||||| ||||||||||| || ||||||||||| |||||||| || |||||    
T  29391667 tcttcccggtgaattggcgaaacatgctgtttccgaaggaaccaaggctgt 29391717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 439
Target Start/End: Original strand, 45576399 - 45576484
Alignment:
Q  354 cttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatttgaga 439  Q
    |||||||| || | ||||||||| ||||||| ||||||||| || || ||||||||||| || ||||| || ||||||||||||||    
T  45576399 cttgttctgcccgatgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttagatttgaga 45576484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 33216558 - 33216594
Alignment:
Q  251 catcaatgatatcttcgagaagcttgctcaagaatca 287  Q
    ||||||||||||||||| |||||||||||||||||||    
T  33216558 catcaatgatatcttcgtgaagcttgctcaagaatca 33216594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 307 - 437
Target Start/End: Original strand, 47317431 - 47317561
Alignment:
Q  307 acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagc 406  Q
    |||||||||||||||||||||||||||||||||| ||||  ||||||||| |||||||||||||||||||||| |||| ||||||||| || || |||||    
T  47317431 acaagaagccaacaatcacttcaagggaaattcaaactgttgtcagacttattcttcctggtgaattggccaaacatgttgtttctgagggtaccaaagc 47317530  T
Q  407 tgtgactaagttcactagttcttagatttga 437  Q
    |||||| ||||| ||||||||||| ||||||    
T  47317531 tgtgaccaagtttactagttcttaaatttga 47317561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 159 - 397
Target Start/End: Complemental strand, 40180547 - 40180309
Alignment:
Q  159 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 258  Q
    ||||| |||||||| ||||| ||||| || |||||||| ||||| || || || ||| | |||||||| || |||||||| |||||||||||||| || |    
T  40180547 gaaacctacaagatatacatcttcaaggttctgaaacaggttcatcctgatatcggtgtttcaagcaaggctatgggaatcatgaacagtttcattaacg 40180448  T
Q  259 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 358  Q
    ||||||| ||||| || ||||| ||||| ||  |  | ||| | || ||||||||||| || || ||||| ||||| ||||| ||||| || ||| | ||    
T  40180447 atatctttgagaaactcgctcaggaatcgtctcgtttggctaggtataacaagaagccgacgattacttctagggagattcaaactgctgttagattggt 40180348  T
Q  359 tcttcctggtgaattggccaagcatgctgtttctgaagg 397  Q
    ||||||||| |||||||| || |||||||||||||||||    
T  40180347 tcttcctggagaattggctaaacatgctgtttctgaagg 40180309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 47317395 - 47317431
Alignment:
Q  251 catcaatgatatcttcgagaagcttgctcaagaatca 287  Q
    ||||||||||||||||| |||||||||||||||||||    
T  47317395 catcaatgatatcttcgtgaagcttgctcaagaatca 47317431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 14715433 - 14715485
Alignment:
Q  342 actgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctga 394  Q
    |||||||| ||||||||||||||||| |||||||||||||||| ||| |||||    
T  14715433 actgcagtgagacttgttcttcctggagaattggccaagcatgttgtgtctga 14715485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 14715372 - 14715420
Alignment:
Q  15 gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctc 63  Q
    |||||||||||||||||||||||||| | ||| ||||  ||||||||||    
T  14715372 gagaagaaacccgcagaggagaagaaatacactgtcgaggagaaagctc 14715420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 159 - 284
Target Start/End: Original strand, 29684701 - 29684826
Alignment:
Q  159 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 258  Q
    ||||| |||||||| || |||||||| || || ||||||||||| || | ||||||| | ||||| ||||| |||||| | || ||||||||| | || |    
T  29684701 gaaacctacaagatatatatattcaaggttctcaaacaagttcatcctgccattggtgtttcaagtaaagctatgggagttattaacagtttcgtgaacg 29684800  T
Q  259 atatcttcgagaagcttgctcaagaa 284  Q
    |||||||  |||| || |||||||||    
T  29684801 atatctttaagaaactcgctcaagaa 29684826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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