View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9752_low_12 (Length: 241)
Name: NF9752_low_12
Description: NF9752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9752_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 34910260 - 34910484
Alignment:
| Q |
1 |
agaaagatggcataaactagctaatacaaatcttagtcgttatgtaatctttaggtctttaaaaagaaccgtaaattagcatcgactagagaacacatat |
100 |
Q |
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| T |
34910260 |
agaaagatggcataaactagctaatacaaatcttagtcgttatgtaatctttaggtctttacaaagaaccgtaaattagcatcgactagagaacacatat |
34910359 |
T |
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| Q |
101 |
aactgaaagaaatcacattccttcacagtgttcttgttgtcgttcccatgatatcgatatacttgcaggattgtggaggtgggggaagggcggaacaaat |
200 |
Q |
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| T |
34910360 |
aactgaaagaaatcacattccttcatagtgttcttgttgtcgttcccatgatatcgatatacttgcaggattgtggaggtgggggaagggcggaacaaat |
34910459 |
T |
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| Q |
201 |
ccataaacaggatgcagcacacaca |
225 |
Q |
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| T |
34910460 |
ccataaacaggatgcagcacacaca |
34910484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 34896475 - 34896602
Alignment:
| Q |
11 |
cataaactagctaatacaaatcttagtcgttatgtaatctttaggtctttaaaaagaaccgtaaattagcatcgactagagaacacatataactgaaaga |
110 |
Q |
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| T |
34896475 |
cataaactagctaatacaaatctcagttgttacgtaatctttaggtcttcaaaaagaaatgtaaactaaaattgaatagagaatgcatatagctgaaaga |
34896574 |
T |
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| Q |
111 |
aatcacattccttcacagtgttcttgtt |
138 |
Q |
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| T |
34896575 |
aatcacattctttcgtactgttcttgtt |
34896602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 134
Target Start/End: Original strand, 34905183 - 34905293
Alignment:
| Q |
24 |
atacaaatcttagtcgttatgtaatctttaggtctttaaaaagaaccgtaaattagcatcgactagagaacacatataactgaaagaaatcacattcctt |
123 |
Q |
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| T |
34905183 |
atacaaatctcagttgtcatgtaatctttaggtcttcaaaaagaaatgtaaattaaaattgaatagagaatacatatagctgaaagaaatcacattcctt |
34905282 |
T |
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| Q |
124 |
cacagtgttct |
134 |
Q |
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| T |
34905283 |
catactgttct |
34905293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 28543306 - 28543241
Alignment:
| Q |
1 |
agaaagatggcataaactagctaatacaaatcttagtcgttatgtaatctttaggtctttaaaaag |
66 |
Q |
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| T |
28543306 |
agaaagatgacataaactagctaacacatatcttagtcgttatgtaatctttaggtctttaaaaag |
28543241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 28543232 - 28543167
Alignment:
| Q |
97 |
atataactgaaagaaatcacattccttcacagtgttcttgttgtcgttcccatgatatcgatatactt |
164 |
Q |
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| T |
28543232 |
atatagctgaaagaaatcacattccttcatagtgttcttgttgt--tccccatgatatcgatatactt |
28543167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 28543134 - 28543083
Alignment:
| Q |
172 |
tgtggaggtgggggaagggcggaacaaatccataaacaggatgcagcacaca |
223 |
Q |
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| T |
28543134 |
tgtggaggtgggggaaaggcggaacaaatcgataaacaggatttagcacaca |
28543083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 28545540 - 28545497
Alignment:
| Q |
1 |
agaaagatggcataaactagctaatacaaatcttagtcgttatg |
44 |
Q |
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| T |
28545540 |
agaaagatgacataaactagctaatacgaatcttagtctttatg |
28545497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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