View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9752_low_13 (Length: 232)

Name: NF9752_low_13
Description: NF9752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9752_low_13
NF9752_low_13
[»] chr2 (6 HSPs)
chr2 (18-221)||(7749312-7749515)
chr2 (18-105)||(7699263-7699350)
chr2 (188-221)||(22166558-22166591)
chr2 (186-221)||(25553370-25553405)
chr2 (190-221)||(39375365-39375396)
chr2 (188-221)||(34423701-34423734)
[»] chr1 (7 HSPs)
chr1 (185-221)||(26450949-26450985)
chr1 (189-221)||(27850741-27850773)
chr1 (190-221)||(14006816-14006847)
chr1 (191-221)||(31267257-31267287)
chr1 (192-221)||(16428332-16428361)
chr1 (189-221)||(10066149-10066181)
chr1 (189-221)||(25137243-25137275)
[»] chr8 (2 HSPs)
chr8 (191-221)||(36052545-36052575)
chr8 (188-221)||(7288203-7288236)
[»] chr6 (2 HSPs)
chr6 (191-221)||(13400049-13400079)
chr6 (188-221)||(5385540-5385573)
[»] chr4 (4 HSPs)
chr4 (191-221)||(15636693-15636723)
chr4 (192-221)||(39270383-39270412)
chr4 (188-221)||(39651994-39652027)
chr4 (193-221)||(24282170-24282198)
[»] chr3 (5 HSPs)
chr3 (191-221)||(34266073-34266103)
chr3 (192-221)||(8874322-8874351)
chr3 (192-221)||(29167169-29167198)
chr3 (192-221)||(30787165-30787194)
chr3 (193-221)||(10182853-10182881)
[»] chr5 (3 HSPs)
chr5 (192-221)||(4035288-4035317)
chr5 (188-221)||(34819539-34819572)
chr5 (188-221)||(42992259-42992292)
[»] chr7 (2 HSPs)
chr7 (193-221)||(23022963-23022991)
chr7 (193-221)||(39036139-39036167)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 7749515 - 7749312
Alignment:
Q  18 caatggacaaaagagaagacctaatgttgagacttttgccagcaattttaatttatttcacatctatgaagtactcataagaagcatcgataccacctaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7749515 caatggacaaaagagaagacctaatgttgagacttttgccagcaattttaatttatttcacatctatgaagtactcataagaagcatcgatatcacctaa 7749416  T
Q  118 atcaaagaatagagcagtgctaacagggttgataataagaggggtagtggtgagttgaaacttgggaaaataatttttgggttaattaagtttttggtcc 217  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |    
T  7749415 atcaaagaatggagcagtgctaacagggttgataataagaggggtagtggtgagttgaaaattgggaaaataatttttggcttaattaagtttttggtac 7749316  T
Q  218 ctat 221  Q
    ||||    
T  7749315 ctat 7749312  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 7699350 - 7699263
Alignment:
Q  18 caatggacaaaagagaagacctaatgttgagacttttgccagcaattttaatttatttcacatctatgaagtactcataagaagcatc 105  Q
    ||||||||||||| |||||| ||| ||| ||| |||  ||| ||| ||||||| |||||||||| ||||| || ||||||||||||||    
T  7699350 caatggacaaaagggaagacttaaagttaagaatttcaccaccaactttaattgatttcacatcaatgaaatattcataagaagcatc 7699263  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 22166558 - 22166591
Alignment:
Q  188 taatttttgggttaattaagtttttggtccctat 221  Q
    ||||||||||||||||||||||||||||||||||    
T  22166558 taatttttgggttaattaagtttttggtccctat 22166591  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 25553370 - 25553405
Alignment:
Q  186 aataatttttgggttaattaagtttttggtccctat 221  Q
    ||||||||| ||||||||||||||||||||||||||    
T  25553370 aataattttagggttaattaagtttttggtccctat 25553405  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 221
Target Start/End: Complemental strand, 39375396 - 39375365
Alignment:
Q  190 atttttgggttaattaagtttttggtccctat 221  Q
    ||||||||||||||||||||||||||||||||    
T  39375396 atttttgggttaattaagtttttggtccctat 39375365  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 34423734 - 34423701
Alignment:
Q  188 taatttttgggttaattaagtttttggtccctat 221  Q
    ||||| ||||||||||||||||||||||||||||    
T  34423734 taattattgggttaattaagtttttggtccctat 34423701  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 26450949 - 26450985
Alignment:
Q  185 aaataatttttgggttaattaagtttttggtccctat 221  Q
    |||||||||| ||||||||||||||||||||||||||    
T  26450949 aaataattttagggttaattaagtttttggtccctat 26450985  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 27850741 - 27850773
Alignment:
Q  189 aatttttgggttaattaagtttttggtccctat 221  Q
    |||||||||||||||||||||||||||||||||    
T  27850741 aatttttgggttaattaagtttttggtccctat 27850773  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 221
Target Start/End: Original strand, 14006816 - 14006847
Alignment:
Q  190 atttttgggttaattaagtttttggtccctat 221  Q
    ||||||||||||||||||||||||||||||||    
T  14006816 atttttgggttaattaagtttttggtccctat 14006847  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 31267287 - 31267257
Alignment:
Q  191 tttttgggttaattaagtttttggtccctat 221  Q
    |||||||||||||||||||||||||||||||    
T  31267287 tttttgggttaattaagtttttggtccctat 31267257  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 221
Target Start/End: Complemental strand, 16428361 - 16428332
Alignment:
Q  192 ttttgggttaattaagtttttggtccctat 221  Q
    ||||||||||||||||||||||||||||||    
T  16428361 ttttgggttaattaagtttttggtccctat 16428332  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 10066149 - 10066181
Alignment:
Q  189 aatttttgggttaattaagtttttggtccctat 221  Q
    |||||||||||||||||||||||| ||||||||    
T  10066149 aatttttgggttaattaagtttttagtccctat 10066181  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 25137275 - 25137243
Alignment:
Q  189 aatttttgggttaattaagtttttggtccctat 221  Q
    |||||| ||||||||||||||||||||||||||    
T  25137275 aattttagggttaattaagtttttggtccctat 25137243  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 36052575 - 36052545
Alignment:
Q  191 tttttgggttaattaagtttttggtccctat 221  Q
    |||||||||||||||||||||||||||||||    
T  36052575 tttttgggttaattaagtttttggtccctat 36052545  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 7288236 - 7288203
Alignment:
Q  188 taatttttgggttaattaagtttttggtccctat 221  Q
    |||||||| |||||||||||||||||||||||||    
T  7288236 taattttttggttaattaagtttttggtccctat 7288203  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 13400049 - 13400079
Alignment:
Q  191 tttttgggttaattaagtttttggtccctat 221  Q
    |||||||||||||||||||||||||||||||    
T  13400049 tttttgggttaattaagtttttggtccctat 13400079  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 5385573 - 5385540
Alignment:
Q  188 taatttttgggttaattaagtttttggtccctat 221  Q
    ||||||||||||||||||||||||| ||||||||    
T  5385573 taatttttgggttaattaagtttttagtccctat 5385540  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 15636693 - 15636723
Alignment:
Q  191 tttttgggttaattaagtttttggtccctat 221  Q
    |||||||||||||||||||||||||||||||    
T  15636693 tttttgggttaattaagtttttggtccctat 15636723  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 221
Target Start/End: Complemental strand, 39270412 - 39270383
Alignment:
Q  192 ttttgggttaattaagtttttggtccctat 221  Q
    ||||||||||||||||||||||||||||||    
T  39270412 ttttgggttaattaagtttttggtccctat 39270383  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 39652027 - 39651994
Alignment:
Q  188 taatttttgggttaattaagtttttggtccctat 221  Q
    ||||||| ||||||||||||||||||||||||||    
T  39652027 taattttagggttaattaagtttttggtccctat 39651994  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 221
Target Start/End: Complemental strand, 24282198 - 24282170
Alignment:
Q  193 tttgggttaattaagtttttggtccctat 221  Q
    |||||||||||||||||||||||||||||    
T  24282198 tttgggttaattaagtttttggtccctat 24282170  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 34266073 - 34266103
Alignment:
Q  191 tttttgggttaattaagtttttggtccctat 221  Q
    |||||||||||||||||||||||||||||||    
T  34266073 tttttgggttaattaagtttttggtccctat 34266103  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 221
Target Start/End: Original strand, 8874322 - 8874351
Alignment:
Q  192 ttttgggttaattaagtttttggtccctat 221  Q
    ||||||||||||||||||||||||||||||    
T  8874322 ttttgggttaattaagtttttggtccctat 8874351  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 221
Target Start/End: Complemental strand, 29167198 - 29167169
Alignment:
Q  192 ttttgggttaattaagtttttggtccctat 221  Q
    ||||||||||||||||||||||||||||||    
T  29167198 ttttgggttaattaagtttttggtccctat 29167169  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 221
Target Start/End: Complemental strand, 30787194 - 30787165
Alignment:
Q  192 ttttgggttaattaagtttttggtccctat 221  Q
    ||||||||||||||||||||||||||||||    
T  30787194 ttttgggttaattaagtttttggtccctat 30787165  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 221
Target Start/End: Complemental strand, 10182881 - 10182853
Alignment:
Q  193 tttgggttaattaagtttttggtccctat 221  Q
    |||||||||||||||||||||||||||||    
T  10182881 tttgggttaattaagtttttggtccctat 10182853  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 221
Target Start/End: Complemental strand, 4035317 - 4035288
Alignment:
Q  192 ttttgggttaattaagtttttggtccctat 221  Q
    ||||||||||||||||||||||||||||||    
T  4035317 ttttgggttaattaagtttttggtccctat 4035288  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 34819572 - 34819539
Alignment:
Q  188 taatttttgggttaattaagtttttggtccctat 221  Q
    |||| |||||||||||||||||||||||||||||    
T  34819572 taatatttgggttaattaagtttttggtccctat 34819539  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 42992259 - 42992292
Alignment:
Q  188 taatttttgggttaattaagtttttggtccctat 221  Q
    ||||||| ||||||||||||||||||||||||||    
T  42992259 taattttagggttaattaagtttttggtccctat 42992292  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 23022963 - 23022991
Alignment:
Q  193 tttgggttaattaagtttttggtccctat 221  Q
    |||||||||||||||||||||||||||||    
T  23022963 tttgggttaattaagtttttggtccctat 23022991  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 221
Target Start/End: Complemental strand, 39036167 - 39036139
Alignment:
Q  193 tttgggttaattaagtttttggtccctat 221  Q
    |||||||||||||||||||||||||||||    
T  39036167 tttgggttaattaagtttttggtccctat 39036139  T

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