View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9752_low_2 (Length: 444)
Name: NF9752_low_2
Description: NF9752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9752_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 38423329 - 38422890
Alignment:
| Q |
1 |
ccatcaagttcaaaccaccaaacatgaccatattatgaggattatttattattcataaataaaacacttgtttttcaactatattcctaattttcttttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38423329 |
ccatcaagttcaaaccaccaaacatgaccatattatgaggattatttattattcataaataaaacacttgtttttcaactatattcctaattttcttttt |
38423230 |
T |
|
| Q |
101 |
ctctatcccattnnnnnnnccttgagtactaagaaaagccaacgtggaaccttccttttctccttaatataaaccccaacccatctcttagttgcaaaca |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38423229 |
ctctatcccattaaaaaaaccttgagtactaagaaaagccaacgtggaaccttccttttctccttaatataaaccccaacccatctcttagttgcaaaca |
38423130 |
T |
|
| Q |
201 |
caaagcaaagttgattatttgagtaattaatcaaaggaaaaaacggaatgtcaattgttgggaagaaaagatcgttgttgaagagactgaagaaggaagc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38423129 |
caaagcaaagttgattatttgagtaattaatcaaaggaaaaaacgtaatgtcaattgttgggaagaaaagatcgttgttgaagagactgaagaaggaagc |
38423030 |
T |
|
| Q |
301 |
attgaggttgaagtttttgtggaaatcatcatcattcaagtggaacagacttactttgcctgtttcattcatggaagatgttgtttttaaggttgtctct |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38423029 |
attgaggttgaagtttttgtggaaatcatcatcattcaagtggaacacacttactttgcctgtttcattcatggaagatgttgtttttaaggttgtctct |
38422930 |
T |
|
| Q |
401 |
gcctttgaggctgttgttcttgttctcaccctctgcttct |
440 |
Q |
| |
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| T |
38422929 |
gcctttgaggctgttgttcttgttctcaccctctgcttct |
38422890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 228 - 440
Target Start/End: Complemental strand, 38413218 - 38413003
Alignment:
| Q |
228 |
taatcaaaggaaaaaacggaatgtcaattgttgggaagaaaagatcgttgttgaagagactgaagaaggaagcattgaggttgaagtttttgtggaaatc |
327 |
Q |
| |
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||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| |
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| T |
38413218 |
taatcaaagagaaaaacggaatgtcaatggttgagaagaaaagatcgttgttgaagaggctgaagaaggaaacattgaggttgaagtttttgtggcaatc |
38413119 |
T |
|
| Q |
328 |
atcatca---ttcaagtggaacagacttactttgcctgtttcattcatggaagatgttgtttttaaggttgtctctgcctttgaggctgttgttcttgtt |
424 |
Q |
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|||||| |||| ||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38413118 |
ttcatcaggattcaggtggaacagacttacttcgccggtttcattcatggaagatattgtttttaaggttgtctctgcctttgaggctgttgttcttgtt |
38413019 |
T |
|
| Q |
425 |
ctcaccctctgcttct |
440 |
Q |
| |
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|||||||||||||||| |
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| T |
38413018 |
ctcaccctctgcttct |
38413003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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