View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9752_low_4 (Length: 418)
Name: NF9752_low_4
Description: NF9752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9752_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 15 - 314
Target Start/End: Complemental strand, 5187829 - 5187530
Alignment:
| Q |
15 |
gaaggagttatggaatttgcttgttatagttcaaacattaatcaactagcagacatcaagactaaacctttgaagctagaagtatttttcaaacaagggg |
114 |
Q |
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| T |
5187829 |
gaaggagttatggaatttgcttattatagttcaaacattaatcaaccagcagacatcaagactaaacctttgaagctagaagtatttttcaaacaagggg |
5187730 |
T |
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| Q |
115 |
agtgattgttaggtatataacattgttttattctcattagtctgttagttagttatggacttagttgtttagcaagtaagctagtttgttatcaactaac |
214 |
Q |
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| T |
5187729 |
agtgattgttaggtatataacattgttttattctcattagtctgttagttagttatggacttacttgtttggcaagtaagctagtttgttatcaactaac |
5187630 |
T |
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| Q |
215 |
ttttcatacgactctatatatgccatgtatcaatgctgctaatcaatgagaatcacttttaccctacatcttctaacctttttctttcccctctcatatt |
314 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5187629 |
ttttcatacgactctatatatgccatgtatcaatgtagttaatcaatgagaatcagttttaccctacatcttctaaccttttcctttcccctctcatatt |
5187530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 193 - 366
Target Start/End: Original strand, 4847911 - 4848084
Alignment:
| Q |
193 |
agctagtttgttatcaactaacttttcatacgactctatatatgccatgtatcaatgctgctaatcaatgagaatcacttttaccctacatcttctaacc |
292 |
Q |
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| T |
4847911 |
agctagtttgttatcaactaacttttcatacgactctatatatgccatgtatcaatgctgctaatcaatgagaatcacttttaccctacatcttctaact |
4848010 |
T |
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| Q |
293 |
tttttctttcccctctcatattcaaccactcaagaatttttagatattnnnnnnngttgaaagtgcttaatgaa |
366 |
Q |
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| T |
4848011 |
ttttcctttcccctctcatattcaaccactcaagaatttttagatattaaaaaaagtttaaagtgcttaatgaa |
4848084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 280 - 386
Target Start/End: Original strand, 4850865 - 4850972
Alignment:
| Q |
280 |
acatcttctaacctttttctttcccctctcatattcaaccactcaagaatttttagatatt-nnnnnnngttgaaagtgcttaatgaaaaatggtccttg |
378 |
Q |
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|||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4850865 |
acattttctaactttttcctttcccctctcatattcaaccactcaagaatttttagatattaaaaaaaagttgaaagtgcttaatgaaaaatggtccttg |
4850964 |
T |
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| Q |
379 |
cgttcata |
386 |
Q |
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|||||||| |
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| T |
4850965 |
cgttcata |
4850972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 4847446 - 4847505
Alignment:
| Q |
49 |
acattaatcaactagcagacatcaagactaaacctttgaagctagaagtatttttcaaac |
108 |
Q |
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| T |
4847446 |
acattaatcaactagcagacatcaagactaaacctttgaagttagaagtattcttcaaac |
4847505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 4847607 - 4847688
Alignment:
| Q |
114 |
gagtgattgttaggtatataacattgttttattctcattagtctgttagttagttatggacttagttgtttagcaagtaagctagt |
199 |
Q |
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||||||||||||| |||| || |||||||||||||||||| || |||||||||||| ||| |||||| |||||||||||||| |
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| T |
4847607 |
gagtgattgttagatataaaaacttgttttattctcattagact----gttagttatggagttacttgttttgcaagtaagctagt |
4847688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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