View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9752_low_8 (Length: 338)
Name: NF9752_low_8
Description: NF9752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9752_low_8 |
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| [»] scaffold0062 (3 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 330
Target Start/End: Original strand, 15707 - 16028
Alignment:
| Q |
9 |
agaagcagagagaaatttgaagggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgttaaaactccattcaatcctgttgag |
108 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15707 |
agaagcagtgagaaatttgaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgag |
15806 |
T |
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| Q |
109 |
gaaaatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacattaatt |
208 |
Q |
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| T |
15807 |
gaaactatctggattacgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaatt |
15906 |
T |
|
| Q |
209 |
atcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataacccaacttaagaatgataattatctacg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15907 |
atcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataactcaacttaagaatgataattatctacg |
16006 |
T |
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| Q |
309 |
catcaagatcgtgtcctttgct |
330 |
Q |
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|||||||||||||||| ||||| |
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| T |
16007 |
catcaagatcgtgtccattgct |
16028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 330
Target Start/End: Original strand, 25875 - 26196
Alignment:
| Q |
9 |
agaagcagagagaaatttgaagggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgttaaaactccattcaatcctgttgag |
108 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25875 |
agaagcagtgagaaatttgaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgag |
25974 |
T |
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| Q |
109 |
gaaaatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacattaatt |
208 |
Q |
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| T |
25975 |
gaaactatctggattacgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaatt |
26074 |
T |
|
| Q |
209 |
atcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataacccaacttaagaatgataattatctacg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26075 |
atcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataactcaacttaagaatgataattatctacg |
26174 |
T |
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| Q |
309 |
catcaagatcgtgtcctttgct |
330 |
Q |
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|||||||||||||||| ||||| |
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| T |
26175 |
catcaagatcgtgtccattgct |
26196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 330
Target Start/End: Original strand, 36041 - 36362
Alignment:
| Q |
9 |
agaagcagagagaaatttgaagggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgttaaaactccattcaatcctgttgag |
108 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36041 |
agaagcagtgagaaatttgaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgag |
36140 |
T |
|
| Q |
109 |
gaaaatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacattaatt |
208 |
Q |
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|||| |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36141 |
gaaactatctggattacgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaatt |
36240 |
T |
|
| Q |
209 |
atcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataacccaacttaagaatgataattatctacg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36241 |
atcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataactcaacttaagaatgataattatctacg |
36340 |
T |
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| Q |
309 |
catcaagatcgtgtcctttgct |
330 |
Q |
| |
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|||||||||||||||| ||||| |
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| T |
36341 |
catcaagatcgtgtccattgct |
36362 |
T |
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