View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_1D_high_11 (Length: 362)

Name: NF9753_1D_high_11
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_1D_high_11
NF9753_1D_high_11
[»] chr3 (1 HSPs)
chr3 (13-362)||(46838993-46839342)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 46839342 - 46838993
Alignment:
Q  13 atggacatcagacataaagcannnnnnnctgcaattagtttcttgtcttgaacatagtaaggtcgatttacagtttctgcatcacttgggtgggtttttt 112  Q
    |||||||| ||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46839342 atggacataagacataaagcatttttttctgcaattagtttcttgtcttgaacatagtaaggtcgatttacagtttctgcatcacttgggtgggtttttt 46839243  T
Q  113 atggtttgcctgctcaatactgaatgattaaccagtcatcgttctattcatcagtgatctttgtaatttatttagacagattctccaatatgctgtgtat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46839242 atggtttgcctgctcaatactgaatgattaaccagtcatcgttctattcttcagtgatctttgtaatttatttagacagattctacaatatgctgtgtat 46839143  T
Q  213 aatcttgaaagacatcaaattaacactannnnnnnnnacagttttgttgatattattaggtcaagggtataaaagtggagttgttattgcgggggaataa 312  Q
    ||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  46839142 aatcttgaaagacatcaaattaacactatttttttttacagttttgttgatattattaggtcaagggtataaaattggagttgttattgcgtgggaataa 46839043  T
Q  313 aatgtcacgtaaatgtgcaaaatagttgggtgggttttgcaattgacaca 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46839042 aatgtcacgtaaatgtgcaaaatagttgggtgggttttgcaattgccaca 46838993  T

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