View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_high_23 (Length: 248)
Name: NF9753_1D_high_23
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 46549785 - 46550027
Alignment:
| Q |
1 |
aatctatttatttatgttcattttgtcgtctacaatttatcactggtatgaatttaatttaatgcatattatatgcaactttgcgttttaagtattagcc |
100 |
Q |
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| T |
46549785 |
aatctatttatttatgttcattttgtcgtctacaatttatcactggtatgaatttaatttaatgcatattatatgcaactttgcgttttaagtattagcc |
46549884 |
T |
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| Q |
101 |
agcacaaatttggttgaacctttgttttcgttgcttcaccaccagacattttctgaagtctatggcaagttatttgccgtgtgatgtgtgtttgaattac |
200 |
Q |
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| T |
46549885 |
agcaaaaatttggttgaacctttgttttcgttacttcaccaccagacattttctgaagtctagggcaagttatttgccgtgtgatgtgtgtttgaattac |
46549984 |
T |
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| Q |
201 |
atgtggtacattctttttaagttatttatgcttaaactccaaa |
243 |
Q |
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| T |
46549985 |
atgtggtacattctttttaagttatttatgcttaaactccaaa |
46550027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 1026341 - 1026578
Alignment:
| Q |
1 |
aatctatttatttatgttcattttgtcgtctacaatttatcactggtatgaatttaatttaatgcatattatatgcaactttgcgttttaagtattagcc |
100 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||| ||||||||||| | |
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| T |
1026341 |
aatctatttatgtatgtttattttgtcgtctacaatttatcactggtatgaatttaaatga-tgcatattatatgcaactttgcgtattaagtattagac |
1026439 |
T |
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| Q |
101 |
agcacaaatttggttgaacctttgttttcgttgcttcaccaccagacattttctgaagtc--tatggc-aagttatttgccgtgtgatgtgtgtttgaat |
197 |
Q |
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| T |
1026440 |
aacacaaatttggttgaacctttgttttcgttacttcaccaccagacattttctgaagtctatatggcaaagttatttgc-------tgtgtgtttgaat |
1026532 |
T |
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| Q |
198 |
tacatgtggtacattctttttaagttatttatgcttaaactccaaa |
243 |
Q |
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| T |
1026533 |
tacatatggtacattccttttaagttattgatgcttaaactccaaa |
1026578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 200
Target Start/End: Original strand, 40828185 - 40828277
Alignment:
| Q |
110 |
ttggttgaacctttgttttcgttgcttcaccac--cagacattttctgaagtctatggcaagttatttgccgtgtgatgtgtgtttgaattac |
200 |
Q |
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|||||||||||||||||||| || ||||||||| |||||||||| | ||||| ||||||||||| | || ||| ||||| |||||| ||||| |
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| T |
40828185 |
ttggttgaacctttgttttcattacttcaccaccacagacattttgtaaagtcgatggcaagttaatggctgtgcgatgtttgtttggattac |
40828277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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