View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9753_1D_high_24 (Length: 236)
Name: NF9753_1D_high_24
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_high_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 51114889 - 51115097
Alignment:
| Q |
5 |
ctattgacaaactactcattcttttctgcattgattcgagtgtttaattagttttaatatggtcaataacaaggtataatcaaaatctagtagcaacctt |
104 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51114889 |
ctattgactgactactcattcttttctgcattgattcgagtgtttaattagttttaatatggtcaataacaaggtataatcaaaatctagtagcaacctt |
51114988 |
T |
|
| Q |
105 |
agatagtgttgaatgcacgttagttatcaaaaaggaaatcctgagtttggaaattaggtggttgttctctgtatcaatatttcaaatacaatggatggct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
51114989 |
agatagtgttgaatgcacgttagttatcaaaaaggaaatcctgagtttggaaattaggtggttgttctctgtttcaatatttcaaatacaatggatggct |
51115088 |
T |
|
| Q |
205 |
tacaaaact |
213 |
Q |
| |
|
||||||||| |
|
|
| T |
51115089 |
tacaaaact |
51115097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University