View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_high_26 (Length: 218)
Name: NF9753_1D_high_26
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 34 - 196
Target Start/End: Complemental strand, 39406618 - 39406454
Alignment:
| Q |
34 |
tttgctcattcgaaattacgacatcttcatagttgttgttgttttgggatcttcatcctcaaggaagctagatcttaatcattgttgt---tgttttgga |
130 |
Q |
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| T |
39406618 |
tttgctcgttcgaaattgtgacatcttcatagtcattgttgttttgggaccttcatcctcaaggaagctagattttaatcattgttgttgttgttttgga |
39406519 |
T |
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| Q |
131 |
gcttttattgcagaaggtgggagagaatgaggagatgaagataaaacttataagtggtgagagaga |
196 |
Q |
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| T |
39406518 |
ggttttattgcagaaggtgggagagaatgaggagatgaagataaaactta-aaatggtgagagaga |
39406454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 33 - 196
Target Start/End: Complemental strand, 50430859 - 50430696
Alignment:
| Q |
33 |
ttttgctcattcgaaattacgacatcttcatagttgttgttgttttgggatcttcatcctcaaggaagctagatcttaatcattgttgttgttttggagc |
132 |
Q |
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| T |
50430859 |
ttttgctccttcaaaattacgacatcttcatagtcgttgttgttttgggaacttgatcctcaaagaagctaaatcttaatcgttgttgttgttttggatg |
50430760 |
T |
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| Q |
133 |
ttttattgcagaaggtgggagagaatgaggagatgaagataaaacttataagtggtgagagaga |
196 |
Q |
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| T |
50430759 |
ttttattgcataaagtaggagagaatgaggaagtgaagataaaacttaaaagtggtgagagaga |
50430696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 21672478 - 21672584
Alignment:
| Q |
30 |
aagttttgctcattcgaaattacgacatcttcatagttgttgttgttttgggatcttcatcctcaaggaagctagatcttaatcattgttgttgttttgg |
129 |
Q |
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||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||| |
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| T |
21672478 |
aagttttgctcattcgaaattacgatatcttcatagtcgctgttgttttgggatcttcaacctcaaagaagctagatcttaatcattgttcttgttttgg |
21672577 |
T |
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| Q |
130 |
agctttt |
136 |
Q |
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| T |
21672578 |
aggtttt |
21672584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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