View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_1D_high_27 (Length: 211)

Name: NF9753_1D_high_27
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_1D_high_27
NF9753_1D_high_27
[»] chr6 (1 HSPs)
chr6 (68-205)||(12613395-12613532)
[»] chr5 (3 HSPs)
chr5 (107-205)||(17572698-17572796)
chr5 (107-205)||(17619916-17620014)
chr5 (94-183)||(17581794-17581883)
[»] chr7 (2 HSPs)
chr7 (107-205)||(14710295-14710393)
chr7 (107-173)||(14756402-14756468)
[»] chr1 (3 HSPs)
chr1 (23-71)||(26181061-26181109)
chr1 (107-205)||(14869721-14869819)
chr1 (27-71)||(26187088-26187132)
[»] chr8 (1 HSPs)
chr8 (107-205)||(16908846-16908944)
[»] chr4 (1 HSPs)
chr4 (166-204)||(53896160-53896198)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 68 - 205
Target Start/End: Original strand, 12613395 - 12613532
Alignment:
Q  68 aaagaggtgacacaaatgtagaaggagatagtagtttgtttaaatggcttaattccaagaaagaaaattctgttctctatgtaagttttggtagcttgaa 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  12613395 aaagaggtgacacaaatgtagaaggagatagtagtttgtttaaatggcttaattccaagaaagagaattctgttctctatgtaagttttggtagcatgaa 12613494  T
Q  168 caagttcccatcatctcaactcattgaaatagctcatg 205  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12613495 caagttcccatcatctcaactcattgaaatagctcatg 12613532  T

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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 17572796 - 17572698
Alignment:
Q  107 ttaaatggcttaattccaagaaagaaaattctgttctctatgtaagttttggtagcttgaacaagttcccatcatctcaactcattgaaatagctcatg 205  Q
    |||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||    
T  17572796 ttaaatggctaaactccaagaaagagaattctgttctctatgtaagttttggcagcttaaacaagttcccaacatctcaactcattgaaatagctcatg 17572698  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 107 - 205
Target Start/End: Original strand, 17619916 - 17620014
Alignment:
Q  107 ttaaatggcttaattccaagaaagaaaattctgttctctatgtaagttttggtagcttgaacaagttcccatcatctcaactcattgaaatagctcatg 205  Q
    ||||||||||  | ||||||||||| ||||||||| |||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||    
T  17619916 ttaaatggctgcactccaagaaagagaattctgttatctatgtaagttttggcagcttaaacaagttcccaccatctcaactcattgaaatagctcatg 17620014  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 17581883 - 17581794
Alignment:
Q  94 gatagtagtttgtttaaatggcttaattccaagaaagaaaattctgttctctatgtaagttttggtagcttgaacaagttcccatcatct 183  Q
    |||||| | ||| ||||||||||||| ||||||||| | |||| ||||||||||||||||||||| ||||| |||||||| ||| |||||    
T  17581883 gatagtggcttgcttaaatggcttaaatccaagaaatagaattttgttctctatgtaagttttggcagcttaaacaagtttccaacatct 17581794  T

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Target: chr7 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 14710393 - 14710295
Alignment:
Q  107 ttaaatggcttaattccaagaaagaaaattctgttctctatgtaagttttggtagcttgaacaagttcccatcatctcaactcattgaaatagctcatg 205  Q
    ||||||||||||| || |||||||| ||||||||||||||| |||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||    
T  14710393 ttaaatggcttaactctaagaaagagaattctgttctctatctaagttttggcagcttaaacaagttcccaacatctcaactcattgaaatagctcatg 14710295  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 14756402 - 14756468
Alignment:
Q  107 ttaaatggcttaattccaagaaagaaaattctgttctctatgtaagttttggtagcttgaacaagtt 173  Q
    ||||||||||||| ||||||||| | |||||||||||||||||||||||||| |||| |||||||||    
T  14756402 ttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagctagaacaagtt 14756468  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 26181061 - 26181109
Alignment:
Q  23 gctgaaatggctactgtgaggatgctcattgccttcgctatcattaaag 71  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26181061 gctgaaatggctactgtgaggatgctcattgcctttgctatcattaaag 26181109  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 205
Target Start/End: Original strand, 14869721 - 14869819
Alignment:
Q  107 ttaaatggcttaattccaagaaagaaaattctgttctctatgtaagttttggtagcttgaacaagttcccatcatctcaactcattgaaatagctcatg 205  Q
    |||| |||||| |||| ||||||||  |||||||||||||||| |||||||| ||| |||||||||||||  |  |||| ||  |||||||||||||||    
T  14869721 ttaagtggcttgattctaagaaagatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcagcttgttgaaatagctcatg 14869819  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 26187088 - 26187132
Alignment:
Q  27 aaatggctactgtgaggatgctcattgccttcgctatcattaaag 71  Q
    ||||||||||| ||||||||||||||||||| || ||||||||||    
T  26187088 aaatggctactatgaggatgctcattgcctttgcgatcattaaag 26187132  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 16908944 - 16908846
Alignment:
Q  107 ttaaatggcttaattccaagaaagaaaattctgttctctatgtaagttttggtagcttgaacaagttcccatcatctcaactcattgaaatagctcatg 205  Q
    |||| |||||| |||| |||||| |  |||||||||| ||||| |||||||| ||| |||||||||||||  |  |||||||  |||||||||||||||    
T  16908944 ttaagtggcttgattcaaagaaatatgattctgttctttatgttagttttgggagcatgaacaagttccctactcctcaacttgttgaaatagctcatg 16908846  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 53896198 - 53896160
Alignment:
Q  166 aacaagttcccatcatctcaactcattgaaatagctcat 204  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  53896198 aacaagttcccaatatctcaactcattgaaatagctcat 53896160  T

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