View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_high_8 (Length: 379)
Name: NF9753_1D_high_8
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_high_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 20 - 379
Target Start/End: Original strand, 32029354 - 32029713
Alignment:
| Q |
20 |
attttgcaggtacctaagaggttgtggataaatcctgatgcagttgcatcttcagagatagggagggtgtgtagtaagttgacgccatggttgtctgtta |
119 |
Q |
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| T |
32029354 |
attttgcaggtacctaagaggttgtggataaatcctgatgcagttgcatcttcagagatagggagggtgtgtagtaagttgacgccatggttgtctgtta |
32029453 |
T |
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| Q |
120 |
tgctgtttcttataagagaaaggtcaagagaggattctgtttggaagcattactttggtattctgccacaggaaactgattctactatatattggtgggt |
219 |
Q |
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| T |
32029454 |
tgctgtttcttataagagaaaggtcaagagaggattctgtttggaagcattactttggtattctgccacaggaaactgattctactatatattggtgggt |
32029553 |
T |
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| Q |
220 |
ttcttttgtttggtttattactaacataaacttgatgtgaaattgagttcttttcatatggttggttgattcagttggtaattggttattccagtacagg |
319 |
Q |
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|||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32029554 |
ttcttttgtttggtttattactaatataagcttaatgtgaaattgagttcttttcatatggttggttgattcagttggtaattggttattccagtacagg |
32029653 |
T |
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| Q |
320 |
tcagaggaagagcttcaagaacttcaaggttagtcatgcaatgtttgtgatacaaaacca |
379 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32029654 |
tcagaggaagagctccaagaacttcaaggttagtcatgcaatgtttgtgatacaaaacca |
32029713 |
T |
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