View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9753_1D_high_9 (Length: 374)
Name: NF9753_1D_high_9
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_high_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 36 - 351
Target Start/End: Original strand, 34878878 - 34879193
Alignment:
| Q |
36 |
attcttcatttggcatcgtccgacgtctaacattaggaaaattccaaacctctctgaggatctttggttagtctattcaacgttaccaaacattgtgttt |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34878878 |
attcttcatttggcatcgtccgacgtctaacattaggaaaattccaaacctctctgaggatctttggttagtctattcaacgttaccaaacattgtgttt |
34878977 |
T |
|
| Q |
136 |
ttcgctatttgcattttcgtatctttattattttaaactggagatgttgttctaaccatatgtgtgtgtaaatgcagtcaaacaatggatgagtacattg |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34878978 |
ttcgctatttgcattttcgtatctttattattttaaaccggagctgttgttctaacaatatgtgtgtgtaaatgcagtcaaacaatggatgagtacattg |
34879077 |
T |
|
| Q |
236 |
acaaactagttcaagtggcagagacattatctcagatgatgagtgaaaatcttggtttagagaaagattacataaagaaagcattttcaggaagtaataa |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34879078 |
acaaactagttcaagtggcagagacattatctcagatgatgagtgaaaatcttggtttggagaaagattacataaagaaagcattttcaggaaataataa |
34879177 |
T |
|
| Q |
336 |
taatggaccagctatg |
351 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34879178 |
taatggaccagctatg |
34879193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 41810621 - 41810571
Alignment:
| Q |
119 |
taccaaacattgtgtttttcgctatttgcattttcgtatctttattatttt |
169 |
Q |
| |
|
||||||||||||||| |||| || ||||||||||| |||||||||| |||| |
|
|
| T |
41810621 |
taccaaacattgtgtgtttctctgtttgcattttcatatctttattctttt |
41810571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 26492831 - 26492771
Alignment:
| Q |
130 |
gtgtttttcgctatttgcattttcgtatctttattattttaaactggagatgttgttctaa |
190 |
Q |
| |
|
|||| |||| ||||| ||||||||||||||||||| |||| |||| ||| ||||| ||||| |
|
|
| T |
26492831 |
gtgtgtttctctattagcattttcgtatctttattcttttgaacttgagttgttgatctaa |
26492771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University