View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_1D_low_1 (Length: 690)

Name: NF9753_1D_low_1
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_1D_low_1
NF9753_1D_low_1
[»] chr2 (1 HSPs)
chr2 (1-96)||(10761335-10761430)
[»] scaffold0707 (3 HSPs)
scaffold0707 (201-341)||(5883-6027)
scaffold0707 (104-195)||(5614-5705)
scaffold0707 (340-391)||(6058-6109)
[»] chr6 (5 HSPs)
chr6 (201-341)||(33576675-33576819)
chr6 (104-195)||(33576406-33576497)
chr6 (113-173)||(34861615-34861675)
chr6 (340-391)||(33576850-33576901)
chr6 (113-192)||(5979311-5979390)
[»] chr3 (1 HSPs)
chr3 (205-296)||(36340541-36340632)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 10761335 - 10761430
Alignment:
Q  1 ataagaacatcgtgttatagttttgggccttcaggcctaaaggaagtgccacgtgaaggagtcatgatggggtacacgtgtcgtttggcagaacgc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10761335 ataagaacatcgtgttatagttttgggccttcaggcctaaaggaagtgccacgtgaaggagtcatgatggggtacacgtgtcgtttggcagaacgc 10761430  T

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Target: scaffold0707 (Bit Score: 95; Significance: 4e-46; HSPs: 3)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 201 - 341
Target Start/End: Original strand, 5883 - 6027
Alignment:
Q  201 ttgtttttatgttatattaattatactccagaaaatgattctcacaaaagagtatttattcccacttgcatattacagaaaagcctaagcacaaataaaa 300  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5883 ttgtttttatgttatattaattatactctagaaaatgattctcacaaaggagtatttattcccacttgcatattacagaaaatcctaagcacaaataaaa 5982  T
Q  301 cta----ggattaatttagtaacnnnnnnncccttaataaatcaa 341  Q
    |||    ||||||||||||||||       |||||||||||||||    
T  5983 ctagccgggattaatttagtaacaaaaaaacccttaataaatcaa 6027  T

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Target: scaffold0707; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 104 - 195
Target Start/End: Original strand, 5614 - 5705
Alignment:
Q  104 tggacatcagccattgaatacgttgaaagcttagttccaactccttggaagtaagttctcttcaactgtttacaattgtttgaatctataat 195  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5614 tggacatcggccattgaatacgttgaaagcttagttccaactccttggaagtaagttctcttcaactgtttacaattgtttgaatctataat 5705  T

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Target: scaffold0707; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 340 - 391
Target Start/End: Original strand, 6058 - 6109
Alignment:
Q  340 aagtggcagtgttaaacataatttcattaacagatggatgtgagcaggaata 391  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  6058 aagtggcagtgttaaacataatttcattaacaaatggatgtgagcaagaata 6109  T

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Target: chr6 (Bit Score: 95; Significance: 4e-46; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 201 - 341
Target Start/End: Original strand, 33576675 - 33576819
Alignment:
Q  201 ttgtttttatgttatattaattatactccagaaaatgattctcacaaaagagtatttattcccacttgcatattacagaaaagcctaagcacaaataaaa 300  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33576675 ttgtttttatgttatattaattatactctagaaaatgattctcacaaaggagtatttattcccacttgcatattacagaaaatcctaagcacaaataaaa 33576774  T
Q  301 cta----ggattaatttagtaacnnnnnnncccttaataaatcaa 341  Q
    |||    ||||||||||||||||       |||||||||||||||    
T  33576775 ctagccgggattaatttagtaacaaaaaaacccttaataaatcaa 33576819  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 104 - 195
Target Start/End: Original strand, 33576406 - 33576497
Alignment:
Q  104 tggacatcagccattgaatacgttgaaagcttagttccaactccttggaagtaagttctcttcaactgtttacaattgtttgaatctataat 195  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33576406 tggacatcggccattgaatacgttgaaagcttagttccaactccttggaagtaagttctcttcaactgtttacaattgtttgaatctataat 33576497  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 34861675 - 34861615
Alignment:
Q  113 gccattgaatacgttgaaagcttagttccaactccttggaagtaagttctcttcaactgtt 173  Q
    ||||| || |||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  34861675 gccatggattacgttgaaagcttagttccgactccttggaagtaagttctcttctactgtt 34861615  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 340 - 391
Target Start/End: Original strand, 33576850 - 33576901
Alignment:
Q  340 aagtggcagtgttaaacataatttcattaacagatggatgtgagcaggaata 391  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  33576850 aagtggcagtgttaaacataatttcattaacaaatggatgtgagcaagaata 33576901  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 5979311 - 5979390
Alignment:
Q  113 gccattgaatacgttgaaagcttagttccaactccttggaagtaagttctcttcaactgtttacaattgtttgaatctat 192  Q
    |||||||| ||| |||||||||| ||| | |||| ||||||||||||||||||| |   ||| |||||||||||||||||    
T  5979311 gccattgattacattgaaagcttggtttcgactcattggaagtaagttctcttctatcattttcaattgtttgaatctat 5979390  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 205 - 296
Target Start/End: Original strand, 36340541 - 36340632
Alignment:
Q  205 ttttatgttatattaattatactccagaaaatgattctcacaaaagagtatttattcccacttgcatattacagaaaagcctaagcacaaat 296  Q
    |||||| |||||||||| |||  |||||| ||||||||||| |||||| |||| ||||  |||| |||||||||||||   |||||||||||    
T  36340541 ttttattttatattaataatatcccagaagatgattctcaccaaagaggatttgttccatcttggatattacagaaaaagttaagcacaaat 36340632  T

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