View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_low_10 (Length: 375)
Name: NF9753_1D_low_10
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_10 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 2 - 146
Target Start/End: Complemental strand, 2312676 - 2312531
Alignment:
| Q |
2 |
atggacatcagaaaaatcttagttttattttgatacattcaagactcaagctgttgtttttgaccaagtatatgtgc-aagataaaacttgatatgtctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||| |
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| T |
2312676 |
atggacatcagaaaaatcttagttttattttgatacattcaagactcaagctgttgtttttgaccaagtatatgtgcaaagataaaatttgatttgtctt |
2312577 |
T |
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| Q |
101 |
tctgaagtgtgaatttttattccaggaacctcaatgacacatctca |
146 |
Q |
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| T |
2312576 |
tctgaagtgtgaatttttattccaggaaccgcgatgacacatctca |
2312531 |
T |
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Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 2 - 146
Target Start/End: Complemental strand, 9261800 - 9261655
Alignment:
| Q |
2 |
atggacatcagaaaaatcttagttttattttgatacattcaagactcaagctgttgtttttgaccaagtatatgtgc-aagataaaacttgatatgtctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || || |||||| |
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| T |
9261800 |
atggacatcagaaaaatcttagttttattttgatacattcaagactcaagctgttgtttttgaccaagtatatgtgcaaagataaaatttaatttgtctt |
9261701 |
T |
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| Q |
101 |
tctgaagtgtgaatttttattccaggaacctcaatgacacatctca |
146 |
Q |
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| T |
9261700 |
tctgaagtgtgaatttttattccaggaaccgcgatgacacatctca |
9261655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 60519 - 60420
Alignment:
| Q |
2 |
atggacatcagaaaaatcttagttttattttgatacattcaagactcaagctgttgtttttgaccaagtatatgtgcaagataaaacttgatatgtcttt |
101 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
60519 |
atggacatctgaaaaatcttagttttattttgatacattcaagactcaagctattgtttttgaccaagtatatgtgcaagataaaacttgatacgtcttt |
60420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 336
Target Start/End: Complemental strand, 35361159 - 35361056
Alignment:
| Q |
233 |
ggggactgagaatgtggcatgtatgtcactttgatgagaaggatggtggtgtgtctgagtttgagtcgatatattgaagatgatggagaccgagactttg |
332 |
Q |
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||||||||||||||||||| |||| ||||||||||| |||||||||||||||| || ||||||| ||| |||||||||||| ||| ||||||||| |
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| T |
35361159 |
ggggactgagaatgtggcaggtatatcactttgatgcgaaggatggtggtgtggctctatttgagttcataggttgaagatgatgaagagtgagactttg |
35361060 |
T |
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| Q |
333 |
atga |
336 |
Q |
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|||| |
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| T |
35361059 |
atga |
35361056 |
T |
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