View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_low_12 (Length: 371)
Name: NF9753_1D_low_12
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 334
Target Start/End: Original strand, 38423459 - 38423773
Alignment:
| Q |
21 |
tcagtatctactcgtgtctggtaagtaagaccccttcgttctagttttctataaattcaaaaaa-tgctaataagtgttgtgtattgatcaagatgcgta |
119 |
Q |
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| T |
38423459 |
tcagtatctactcgtgtctggtaagtaagaccccttccttctagttttctataaattcaaaaaaatgctaataattgttgtgtattgatcaagatg--ta |
38423556 |
T |
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| Q |
120 |
cggttcacaaaagaagctagaattcatctttaaaaagatgaatttttaactaataggttatttgacaaaaagaaaa--cagnnnnnnncaatgtaaaact |
217 |
Q |
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| T |
38423557 |
tggttcacaaaagaagctagaattcatctttaaaaagatgaatttttaactaatagattatttgacaaaaaaaaaaaacagtttttttcaatgtaaaact |
38423656 |
T |
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| Q |
218 |
tcaacttttattttctttaactagtatatcgtatcaccagttaacctccctaagaactcaaaattaaaattaacattccnnnnnnnnnatgttaacattc |
317 |
Q |
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| T |
38423657 |
ttaacttttattttctttaactagtatatcgtatcaccagttaacctccctaagaactcaaaattaaaattaacattcctttttttttatgttaacattc |
38423756 |
T |
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| Q |
318 |
ttttctctaactgaacc |
334 |
Q |
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||||||||||||||||| |
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| T |
38423757 |
ttttctctaactgaacc |
38423773 |
T |
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