View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_low_14 (Length: 362)
Name: NF9753_1D_low_14
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_14 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 32158164 - 32157818
Alignment:
| Q |
17 |
acatcaatgttacctgttatttgattcctgtcaagggaaccactaatccccgttttcgtcttagatggtttactcccattgttgaggtatagtacaacta |
116 |
Q |
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| T |
32158164 |
acatcaatgttacctgctatttgattcctgtcaagggaactactaatccccgttttcgtcttagatggtttactcccattgttgaggtatagtacaacta |
32158065 |
T |
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| Q |
117 |
attatc-attaccaaaaactctcgcacnnnnnnncttcttcacaagtagatgagttaggtcttgggggctcatcagaatcggagcacgtctcaagattca |
215 |
Q |
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| T |
32158064 |
attatccagtaccacaaactctcacactttttttcttcttcataagtagatgagttaggtcttgggggctcatcagaatcggagcacgtctcaagattca |
32157965 |
T |
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| Q |
216 |
taaactattgatagggatacttactaaattgtttaccagcgaagtctattcacccgatttctgctgtatttgaagtcacaatattgtgggataacaatca |
315 |
Q |
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| T |
32157964 |
taaactattgatagggatacttactaaattgtttaccagcgaagtctattcacccgatttctgctgtatttgaagtcacaatattgtgggataacaatca |
32157865 |
T |
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| Q |
316 |
actccttgcgagttggaccaactttcgtgaacatatgcagtctctga |
362 |
Q |
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| T |
32157864 |
actccttgcgagttggaccaactttcgtgaacatatgcagtctctga |
32157818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 32165240 - 32165187
Alignment:
| Q |
52 |
ggaaccactaatccccgttttcgtcttagatggtttactcccattgttgaggta |
105 |
Q |
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| T |
32165240 |
ggaacctctattcctcgttttggtcttagatggtttactcctgttgttgaggta |
32165187 |
T |
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