View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_low_16 (Length: 359)
Name: NF9753_1D_low_16
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_16 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 5 - 359
Target Start/End: Original strand, 3895162 - 3895516
Alignment:
| Q |
5 |
agattattcttatgatgcaaaggagagaacaaaggatgctgcagagaatgctggagagagtataagagactatgcttatgatgccaaggatagaacaaag |
104 |
Q |
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| T |
3895162 |
agattatgcttatgatgcaaaggagagaacaaaggatgctgcagagaatgctggagagagtataagagactatgcttatgatgccaaggatagaacaaag |
3895261 |
T |
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| Q |
105 |
gaagctgcagagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataagacaaaag |
204 |
Q |
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| T |
3895262 |
gaagctgcagagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataagacaaaag |
3895361 |
T |
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| Q |
205 |
aaggagctgagaaaacggcagagaagacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaagg |
304 |
Q |
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| T |
3895362 |
aaggagctgagaaaacggcggagaagacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaagg |
3895461 |
T |
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| Q |
305 |
agcgtgggagacagcgaaggatgcaacacaaaagatcaaggagactgttgttgga |
359 |
Q |
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| T |
3895462 |
agcgtgggagacagcgaaggatgcaacacaaaagatcaaggagactgttgttgga |
3895516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 3895139 - 3895265
Alignment:
| Q |
48 |
gagaatgctggagagagtataagagactatgcttatgatgccaaggatagaacaaaggaagctgcagagagtgctggggagaaagctagagattatgctt |
147 |
Q |
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| T |
3895139 |
gagaatgctggagagaaggctagagattatgcttatgatgcaaaggagagaacaaaggatgctgcagagaatgctggagagagtataagagactatgctt |
3895238 |
T |
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| Q |
148 |
atgatgcaaaggaaagaaccaaggaag |
174 |
Q |
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| T |
3895239 |
atgatgccaaggatagaacaaaggaag |
3895265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 3895016 - 3895079
Alignment:
| Q |
111 |
gcagagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaag |
174 |
Q |
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| T |
3895016 |
gcagagaatgctggagagaaagctagagactatgcttatgaggtaaaagacagaaccaatgaag |
3895079 |
T |
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