View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_low_18 (Length: 343)
Name: NF9753_1D_low_18
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_18 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 10 - 343
Target Start/End: Complemental strand, 46549807 - 46549474
Alignment:
| Q |
10 |
aaatgaacataaataaatagattgtctgagattaggtcacaataatagctaatgaaatattgcaacccaaccaaaagtttgccgattttgtgatacctga |
109 |
Q |
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| T |
46549807 |
aaatgaacataaataaatagattgtctgagattaggtcacaataatagctaatgaaatattgcaacccaaccaaaagtttgccgagtttgtgatacctga |
46549708 |
T |
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| Q |
110 |
ggcagttgaaaaatgtgactcaatattgtgatatgtaatttggactttaggttggtcaatcaacaccgtatcttgaatctaaacatctggaccatttggt |
209 |
Q |
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| T |
46549707 |
ggcagttgaaaaatgtgactcaatattgtgatatgtaatttggactttaggttggtcaatcaacgccgtatcttgaatcgaaacatctggaccatttggt |
46549608 |
T |
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| Q |
210 |
aagaattctggtttgattgtgtataacattctccatagagaagacatccagggatcaagagtaccttcgtagctacaaataattataccatcattagtca |
309 |
Q |
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| T |
46549607 |
aagaattctggtttgattgtgtataacattctccatagagaagacagccagggatcaagagtaccttcgtagctacaaataattataccatcattagtca |
46549508 |
T |
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| Q |
310 |
cttaaataaaatatctacatttcaatattaaaga |
343 |
Q |
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| T |
46549507 |
cttaaataaaatatctacatttcaatattaaaga |
46549474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 10 - 343
Target Start/End: Complemental strand, 1026363 - 1026030
Alignment:
| Q |
10 |
aaatgaacataaataaatagattgtctgagattaggtcacaataatagctaatgaaatattgcaacccaaccaaaagtttgccgattttgtgatacctga |
109 |
Q |
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| T |
1026363 |
aaataaacatacataaatagattgtctgagattaggtcacaataacagctaatggaatattgcaagccaaccaagaatttaccgagtttgtgatacctga |
1026264 |
T |
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| Q |
110 |
ggcagttgaaaaatgtgactcaatattgtgatatgtaatttggactttaggttggtcaatcaacaccgtatcttgaatctaaacatctggaccatttggt |
209 |
Q |
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| T |
1026263 |
ggcagttgaaaaatgtgactcgatattgtgatatgtaatttggactttaggttggtcaatcaacactgtatcttgaatcgaaacatctggaccatttggt |
1026164 |
T |
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| Q |
210 |
aagaattctggtttgattgtgtataacattctccatagagaagacatccagggatcaagagtaccttcgtagctacaaataattataccatcattagtca |
309 |
Q |
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| T |
1026163 |
aagaattctggtttgatcgtgtttaaaattctccatagagaagacatccagggatcaagagtaccttcatagctacaaataattataccatcattagtca |
1026064 |
T |
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| Q |
310 |
cttaaataaaatatctacatttcaatattaaaga |
343 |
Q |
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| T |
1026063 |
cttaaataaaatatctacatttcaatattaaaga |
1026030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 129 - 343
Target Start/End: Complemental strand, 40827981 - 40827767
Alignment:
| Q |
129 |
tcaatattgtgatatgtaatttggactttaggttggtcaatcaacaccgtatcttgaatctaaacatctggaccatttggtaagaattctggtttgattg |
228 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||| | ||||||| |||||||||||| |
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| T |
40827981 |
tcaatattgtgatatgtgatttggactttaggttggtcaatcaacgttgtatcttgaatcaaaacatctggaccactaggtaagagttctggtttgatca |
40827882 |
T |
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| Q |
229 |
tgtataacattctccatagagaagacatccagggatcaagagtaccttcgtagctacaaataattataccatcattagtcacttaaataaaatatctaca |
328 |
Q |
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||| ||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |||||| |||||||||| |||||| |||||||||||| |||| | |
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| T |
40827881 |
tgtttaacattctccatagagaagacagccaaggatcaagagtaccttcatagctgcaaatagttataccatctttagtcccttaaataaaatctctata |
40827782 |
T |
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| Q |
329 |
tttcaatattaaaga |
343 |
Q |
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| T |
40827781 |
atccaatatcaaaga |
40827767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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