View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_low_2 (Length: 512)
Name: NF9753_1D_low_2
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 16 - 512
Target Start/End: Complemental strand, 40514835 - 40514343
Alignment:
| Q |
16 |
tggacatcctaccatgcgcacaacacacaaatgtttgtataaacttttggcatagggtggtatcatcacgaaagacctaagacagctttggtgtttgcct |
115 |
Q |
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| T |
40514835 |
tggacatcctaccatgcgcacaacacacaaatgtttgtataaacttttggcatagggtggtatcatcacgaaagacctaagacagctttggtgtttgcct |
40514736 |
T |
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| Q |
116 |
taaatataacaataaccatgtgccgtgagtgtcaatgccaaatattgtgaagtgatatgtcggcaataacttacatagagtggattctaaccaaacagca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40514735 |
taaatataacaataaccatgtgccgtgagtgtcaatgccaaatattgtgaagtgatatgtcggcaataacttacatagagtggattctaaccaaacagca |
40514636 |
T |
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| Q |
216 |
cttaaaatgatcatataacccacaaataatattggaatttgatttaattagcatgcgtatcactgtacgatatccatttttcaaatgatcacatttactt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40514635 |
cttaaaatgatcatataacccacaaataatattggaatttgatttaattagcatgcgtatcactgtacgaaatccatttttcaaatgatcacatttactt |
40514536 |
T |
|
| Q |
316 |
acaccatcatctcaaatattttcagtaagaaatgcatggagagtgaaaatgataacaaaggaaggaaatggtttcctcattagaatcatctcataaaagc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40514535 |
--accatcatctcaaatattttcagtaagaaatgcatggagagtgaaaatgataacaaaggaaggaaatggtttcctcattagaatcatctcataaaagc |
40514438 |
T |
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| Q |
416 |
aaaagcatctagagtttaccatgccttgcggcagggannnnnnnnnnnnacaaggaagaaaataggaatatttaaaggacaaatggtgaaagctagt |
512 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40514437 |
aaaagcatctagagtttaccatgccttgcggcaggga--ttttttttttacaaggaagaaaataggaatatttaaaggacaaatggtgaaagctagt |
40514343 |
T |
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