View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_low_23 (Length: 308)
Name: NF9753_1D_low_23
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 38187827 - 38188112
Alignment:
| Q |
20 |
agaggatcttcacgcatggacctagtcttggggtcataatgtgcagaattgacat------tgagaagatattttgcagtatcctctcggatacgtaggt |
113 |
Q |
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| T |
38187827 |
agaggatcttcacgcatggacctagtcttggggtcataatgtgcagaattgacatcgagattgagaagatattttgcagtatcctctcggatacgtaggt |
38187926 |
T |
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| Q |
114 |
tcctgaagattaagatatttcagttacaatccacgtaagaaaaataatagaagtgataattaccaatcaactctgctatgcacttttacaatgacagcat |
213 |
Q |
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| T |
38187927 |
tcctgaagattaagatatttcagttacaatccacgtaagaaaaataatagaagtgataattaccaatcaactctgctatgcacttttacaatgacagcat |
38188026 |
T |
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| Q |
214 |
cataaaaattacctcacagttcctctactcccaccacctgttgtacgcacacgcttctcaacctttgcgaagtccatttgtttcat |
299 |
Q |
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| T |
38188027 |
cataaaaattacctcacagttcctctactcccaccacctgttgtacgcacacgcttctcaacctttgcgaagtccatttgtttcat |
38188112 |
T |
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Back To:
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Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 38923070 - 38922774
Alignment:
| Q |
20 |
agaggatcttcacgcatggacctagtcttggggtcataatgtgcagaattgacat------tgagaagatattttgcagtatcctctcggatacgtaggt |
113 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
38923070 |
agaggatcttcacgcatggacctggtcttggggtcataatgtgcagaattgacatcaagattgagaagatattttgcagtatcctctcgaatacgtaggt |
38922971 |
T |
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| Q |
114 |
tcctgaagattaagatat--ttcagttacaatccacgtaagaaaaataatagaagtgataatt------------accaatcaactctgctatgcacttt |
199 |
Q |
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| T |
38922970 |
tcctgaaggttaagatatatttacattacaattcatgtaagaaaaattatagaactgataattgtaatttaacggaccaataaacttggcgctgcattat |
38922871 |
T |
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| Q |
200 |
tacaatgacagcatcataaaaattacctcacagttcctctactcccaccacctgttgtacgcacacgcttctcaacctttgcgaagtccatttgttt |
296 |
Q |
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|||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||| |
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| T |
38922870 |
tacaatgagagcaacataaaaattacctcacagttcctgtactcccaccacctgttgttcgcacacgcttctcaacctttgcaaaatccatctgttt |
38922774 |
T |
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