View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_low_25 (Length: 282)
Name: NF9753_1D_low_25
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 49 - 260
Target Start/End: Complemental strand, 32156930 - 32156719
Alignment:
| Q |
49 |
agagaagatgttatttgaagtttttgaaaatgtatttgaaaaaacagattgaatattttttgcaatatgtgcatatagaacattatgaagcttattattt |
148 |
Q |
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| T |
32156930 |
agagaagatgttatttgaagtttttgaaaatgtatttgaaaaaacagattgaatattttttgcaatatgtgcatatagaacattatgaagcttattattt |
32156831 |
T |
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| Q |
149 |
ctcctaggttgttgtcacatctggaaagaatgtcatagaagtgcaaccacaatttgatgcaattgtaaaatctcctggaagggggataattgttacaggg |
248 |
Q |
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| T |
32156830 |
ctcctaggttgttgtcacatctggaaagaatgtcatagaagtgcaaccacaatttgatgcaattgtaaaatctcctggaagggggataattgttacaggg |
32156731 |
T |
|
| Q |
249 |
atcgctcctcca |
260 |
Q |
| |
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|||||||||||| |
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| T |
32156730 |
atcgctcctcca |
32156719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 147 - 260
Target Start/End: Complemental strand, 32167269 - 32167156
Alignment:
| Q |
147 |
ttctcctaggttgttgtcacatctggaaagaatgtcatagaagtgcaaccacaatttgatgcaattgtaaaatctcctggaagggggataattgttacag |
246 |
Q |
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|||||||||||| |||||||||||||| | ||||||| |||||| ||||||||||||||||||||||| |||| ||| || | ||||||||||||||||| |
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| T |
32167269 |
ttctcctaggttcttgtcacatctggagaaaatgtcacagaagtacaaccacaatttgatgcaattgttaaatgtcccgggatggggataattgttacag |
32167170 |
T |
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| Q |
247 |
ggatcgctcctcca |
260 |
Q |
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|||||||||||||| |
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| T |
32167169 |
ggatcgctcctcca |
32167156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 27321662 - 27321535
Alignment:
| Q |
132 |
tatgaagcttattatttctcctaggttgttgtcacatctggaaagaatgtcatagaagtgcaaccacaatttgatgcaattgtaaaatctcctggaaggg |
231 |
Q |
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||||||||| ||||||| || ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| | | |||| ||||||||| |
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| T |
27321662 |
tatgaagctcattatttatcataggttgttgtcacatctggaaaaaatgtcttagaagtacaaccacaatttgatgcactagctaaattatctggaaggg |
27321563 |
T |
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| Q |
232 |
ggataattgttacagggatcgctcctcc |
259 |
Q |
| |
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| ||| |||||||||||| || ||||| |
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| T |
27321562 |
gagtaagtgttacagggattgcgcctcc |
27321535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 260
Target Start/End: Complemental strand, 32164609 - 32164485
Alignment:
| Q |
136 |
aagcttattatttctcctaggttgttgtcacatctggaaagaatgtcatagaagtgcaaccacaatttgatgcaattgtaaaatctcctggaagggggat |
235 |
Q |
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||||||||||||||| ||||||||| ||| |||||||||| ||||||| |||| | || |||||| | |||||||||| |||| ||||||||||| | |
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| T |
32164609 |
aagcttattatttcttctaggttgtggtcgcatctggaaaaaatgtcacagaaatacagccacaactggatgcaattgctaaattacctggaaggggatt |
32164510 |
T |
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| Q |
236 |
aattgttacagggatcgctcctcca |
260 |
Q |
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||||||||| ||||| ||||||||| |
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| T |
32164509 |
aattgttaccgggattgctcctcca |
32164485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 27347611 - 27347484
Alignment:
| Q |
132 |
tatgaagcttattatttctcctaggttgttgtcacatctggaaagaatgtcatagaagtgcaaccacaatttgatgcaattgtaaaatctcctggaaggg |
231 |
Q |
| |
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||||||||| |||||||||| ||||||||| ||||||||||||| | |||| ||||||| ||| |||||||||||||| | | |||| ||||||||| |
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| T |
27347611 |
tatgaagctcattatttctcttaggttgttctcacatctggaaaaattgtcttagaagtacaagcacaatttgatgcactagctaaattatctggaaggg |
27347512 |
T |
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| Q |
232 |
ggataattgttacagggatcgctcctcc |
259 |
Q |
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| ||| |||||||||||| || ||||| |
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| T |
27347511 |
gagtaagtgttacagggattgcacctcc |
27347484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 27360250 - 27360322
Alignment:
| Q |
140 |
ttattatttctcctaggttgttgtcacatctggaaagaatgtcatagaagtgcaaccacaatttgatgcaatt |
212 |
Q |
| |
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|||||||||||| |||||||| |||||||||||||||||||||| || | | || |||||||||||||||||| |
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| T |
27360250 |
ttattatttctcttaggttgtggtcacatctggaaagaatgtcaaagcaatacatccacaatttgatgcaatt |
27360322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 32157017 - 32156977
Alignment:
| Q |
1 |
acacagattcaagatgacttacttgtaattcctaataattc |
41 |
Q |
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| T |
32157017 |
acacaaattcaagatgacttacttgtaattcctaataattc |
32156977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 250
Target Start/End: Complemental strand, 27262595 - 27262489
Alignment:
| Q |
144 |
tatttctcctaggttgttgtcacatctggaaagaatgtcatagaagtgcaaccacaatttgatgcaattgtaaaatctcctggaagggggataattgtta |
243 |
Q |
| |
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|||||| | ||||||||| |||||||||||| |||||| ||||||| |||||||| ||||||||| | | |||| |||||||||| ||| ||||| |
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| T |
27262595 |
tatttcacttaggttgttctcacatctggaacaaatgtcttagaagtacaaccacattttgatgcactagctaaattatctggaaggggagtaagtgtta |
27262496 |
T |
|
| Q |
244 |
cagggat |
250 |
Q |
| |
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||||||| |
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| T |
27262495 |
cagggat |
27262489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 212
Target Start/End: Original strand, 44291521 - 44291617
Alignment:
| Q |
116 |
tgtgcatatagaacattatgaagcttattatttctcctaggttgttgtcacatctggaaagaatgtcatagaagtgcaaccacaatttgatgcaatt |
212 |
Q |
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||||||||| ||||||| |||||||||||||| | ||||||||| || |||| | ||||||||| | |||||| |||||||| |||||||||||| |
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| T |
44291521 |
tgtgcatatccaacattaagaagcttattatttgttctaggttgtggttgcatccgcaaagaatgtgacagaagtacaaccacattttgatgcaatt |
44291617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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