View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_low_26 (Length: 282)
Name: NF9753_1D_low_26
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 15617570 - 15617314
Alignment:
| Q |
19 |
catcaactactgaattcttttcgagaaacgcttcgttaaccacattccaaagacgagccctgcgccaaacttgcatagttaaaggacactcgaatttcga |
118 |
Q |
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| T |
15617570 |
catcaactactgaattcttttcgagaaacgcttcgttaaccacattccaaagacgagccctacgccaaacctgcatagttaaaggacactcgaatttcga |
15617471 |
T |
|
| Q |
119 |
aacaaaaatatgagcaagatcctcatgaagaccaccacaatatattgacacaacttggggaatattttactcctttatcttaaaaccatacttggtttgg |
218 |
Q |
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| T |
15617470 |
aacaaa--tatgagcaagatcctcatgaagaccaccacaatatattgacacaacttggggaatatttcactcctttatcttaaaaccatacttggtttgg |
15617373 |
T |
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| Q |
219 |
taagcaccccacgatacgttttatagatcaaattctttacttttggaggcactttcagtc |
278 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15617372 |
taagca-cccacgatacgttttccagatcaaattctttacttttggaggcactttcagtc |
15617314 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 43218793 - 43218883
Alignment:
| Q |
19 |
catcaactactgaattcttttcgagaaacgcttcgttaaccacattccaaagacgagccctgcgccaaacttgcatagttaaaggacactc |
109 |
Q |
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| T |
43218793 |
catcaactgctgaattcttttcgagaaacacctcatgaaccacattccaaaggccaatcttacgccaaacctgcacagtaaaaggacactc |
43218883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 20250826 - 20250736
Alignment:
| Q |
19 |
catcaactactgaattcttttcgagaaacgcttcgttaaccacattccaaagacgagccctgcgccaaacttgcatagttaaaggacactc |
109 |
Q |
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|||||||| |||||||||||| ||||||| | || | ||||||||||||||| | | | | |||||||| |||| ||| ||||||||||| |
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| T |
20250826 |
catcaactgctgaattctttttgagaaacacctcatgaaccacattccaaaggccaatcttacgccaaacctgcacagtaaaaggacactc |
20250736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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