View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_low_27 (Length: 281)
Name: NF9753_1D_low_27
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 43603186 - 43603445
Alignment:
| Q |
1 |
gctttcactatttgggtagtacattatcattattctttaatctctatgtgatttctaaacaaatgctattttgaca--gaatcttaggactaattttttc |
98 |
Q |
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| T |
43603186 |
gctttcactatttgggtagtacattatcattattctttaatctctatgtgatttctaaacaaatgctattttgacaaagaatcttaggactaattttttc |
43603285 |
T |
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| Q |
99 |
tgtaatccttcttggttgcttttcagaattactttagctctgaatgtgcatggtattgcccttgtttacacttctgcttcgttggctgctgctattgtta |
198 |
Q |
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| T |
43603286 |
tgtaatccttcttggttgcttttcagaattactttagctctgaatgtgcatggtattgcccttgtttacacttctgcttcgttggctgctgctattgtta |
43603385 |
T |
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| Q |
199 |
attgccttcctgcttgtacattcttctttgctgttctgctcaggtaaattttggaaaatc |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43603386 |
attgccttcctgcttgtacattcttctttgctgttctgctcaggtaaattttggaaaatc |
43603445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 76 - 256
Target Start/End: Original strand, 43609671 - 43609852
Alignment:
| Q |
76 |
agaatcttaggactaattttttctgtaatccttcttggttgctttt-cagaattactttagctctgaatgtgcatggtattgcccttgtttacacttctg |
174 |
Q |
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| T |
43609671 |
agaatcttaggactaattaggtctataatcctacttggttgctttttcagacttactttaactctgaatgtgcatggtgttgctctttcttatacttctg |
43609770 |
T |
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| Q |
175 |
cttcgttggctgctgctattgttaattgccttcctgcttgtacattcttctttgctgttctgctcaggtaaattttggaaaa |
256 |
Q |
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| T |
43609771 |
ctatgctgtctggtgcaattgttaattgtcttccggcttcgacattcttctttgctgttctgctcaggtaaatttttgaaaa |
43609852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 103 - 256
Target Start/End: Original strand, 43616244 - 43616397
Alignment:
| Q |
103 |
atccttcttggttgcttttcagaattactttagctctgaatgtgcatggtattgcccttgtttacacttctgcttcgttggctgctgctattgttaattg |
202 |
Q |
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||||| ||| |||| ||||||||||||||||| || |||||||| |||||||||| |||| |||||| |||||| |||||||||||| |||||||| || |
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| T |
43616244 |
atcctactttgttgtttttcagaattactttaactttgaatgtgaatggtattgctcttgcttacacgtctgctatgttggctgctgcaattgttaactg |
43616343 |
T |
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| Q |
203 |
ccttcctgcttgtacattcttctttgctgttctgctcaggtaaattttggaaaa |
256 |
Q |
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| T |
43616344 |
tcttccggcttcaacattcttctttgctgttatgctcaggtaaattttggaaaa |
43616397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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