View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_low_28 (Length: 279)
Name: NF9753_1D_low_28
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 5 - 273
Target Start/End: Complemental strand, 44136570 - 44136300
Alignment:
| Q |
5 |
atcagagattggagccataagagtttgcagagttgcattcaggtagagatcatgccaggaggaagtaacaagagcaccatctaaacgggcttccttcgaa |
104 |
Q |
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| T |
44136570 |
atcagagattggagccataagagtttgcagagttgcattcaggtagagatcatgccaggaggaagtaacaagagcacgatctaaacgggcttccttcgaa |
44136471 |
T |
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| Q |
105 |
gaagcggtgccgatactttcgaaccaagtgaattggtagccaagaagaggtagatcatataaattacagtcggtgaccacctgttggaatc--ctaatga |
202 |
Q |
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| T |
44136470 |
gaagcggtgccgatacttttgaaccaagtgaattggtagccaagaagaggtagatcatataaattacagtcggtgaccacctgttggaatcctctaatga |
44136371 |
T |
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| Q |
203 |
gccaggcagtacgagaagggccacctcgtttatcttccggagataggttgtcattgaagtcgccaattatg |
273 |
Q |
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| T |
44136370 |
gccaggcagtacgagaagggccacctcgtttatcttccggagataggtggtcattgaagtcgccaattatg |
44136300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 175
Target Start/End: Original strand, 12462179 - 12462297
Alignment:
| Q |
57 |
tgccaggaggaagtaacaagagcaccatctaaacgggcttccttcgaagaagcggtgccgatactttcgaaccaagtgaattggtagccaagaagaggta |
156 |
Q |
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| T |
12462179 |
tgccaggaggacgtgacaagggctctatcaagacgggcttctttcgaggattcggttccaatacttttgaaccaagtgaattggtaaccaatcaaaggta |
12462278 |
T |
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| Q |
157 |
gatcatataaattacagtc |
175 |
Q |
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| T |
12462279 |
tatcaagtaaattacagtc |
12462297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 16859925 - 16859835
Alignment:
| Q |
57 |
tgccaggaggaagtaacaagagcaccatctaaacgggcttccttcgaagaagcggtgccgatactttcgaaccaagtgaattggtagccaa |
147 |
Q |
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| T |
16859925 |
tgccaggaggacgtgacaagggctctatcaagacgggcttctttcgaggattcggttccaatacttttgaaccaagtgaattggtaaccaa |
16859835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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