View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_1D_low_29 (Length: 274)

Name: NF9753_1D_low_29

Description: NF9753_1D

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9753_1D_low_29

[»] chr8 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr8 (Bit Score: 136; Significance: 5e-71; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 136; E-Value: 5e-71

Query Start/End: Original strand, 102 - 253

Target Start/End: Original strand, 38085190 - 38085341

Alignment:

Q	102	aaagctgaataataataaataacgaccatgtaatcataataaatagcgaccatgtaattattttcgtcactttgatatctatatgcattgacattgtaaa	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38085190	aaagctgaataataataaataacgaccatgtaatcataataaatagcgaccatgtaattattttcgtcactttgatatctatatgtattgacattgtaaa	38085289	T

Q	202	catttatatgaaaaacatatttgatgactaaaatgactactaataaaaaatt	253	Q
		\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	38085290	catctatatgaaaaacacatttgatgactaaaatgactactaatcaaaaatt	38085341	T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 66; E-Value: 3e-29

Query Start/End: Original strand, 1 - 66

Target Start/End: Original strand, 38750349 - 38750414

Alignment:

Q	1	ggagtttataagcctgaagagatgaaggggaaccagatgaaagaaggtattgcatattacaccttt	66	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38750349	ggagtttataagcctgaagagatgaaggggaaccagatgaaagaaggtattgcatattacaccttt	38750414	T

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