View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_1D_low_30 (Length: 273)

Name: NF9753_1D_low_30
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_1D_low_30
NF9753_1D_low_30
[»] scaffold0016 (2 HSPs)
scaffold0016 (41-268)||(53813-54038)
scaffold0016 (1-45)||(51246-51290)
[»] chr4 (4 HSPs)
chr4 (80-143)||(15707358-15707421)
chr4 (1-45)||(15708819-15708863)
chr4 (41-85)||(15707440-15707484)
chr4 (12-45)||(26795948-26795981)
[»] scaffold1526 (2 HSPs)
scaffold1526 (88-143)||(1249-1304)
scaffold1526 (41-85)||(1173-1217)
[»] scaffold0642 (3 HSPs)
scaffold0642 (80-143)||(4102-4165)
scaffold0642 (1-45)||(6663-6707)
scaffold0642 (41-85)||(4184-4228)
[»] scaffold0345 (3 HSPs)
scaffold0345 (80-143)||(14014-14077)
scaffold0345 (1-45)||(16576-16620)
scaffold0345 (41-85)||(14096-14140)
[»] scaffold0105 (3 HSPs)
scaffold0105 (80-143)||(24904-24967)
scaffold0105 (1-45)||(22362-22406)
scaffold0105 (41-85)||(24841-24885)
[»] chr2 (3 HSPs)
chr2 (88-143)||(3378229-3378284)
chr2 (1-45)||(3380883-3380927)
chr2 (41-85)||(3378316-3378360)
[»] chr8 (3 HSPs)
chr8 (80-143)||(44495504-44495567)
chr8 (7-45)||(44498151-44498189)
chr8 (41-82)||(44495589-44495630)
[»] chr6 (1 HSPs)
chr6 (144-228)||(21221835-21221922)


Alignment Details
Target: scaffold0016 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 41 - 268
Target Start/End: Original strand, 53813 - 54038
Alignment:
Q  41 aagaacgaagccactcaccgctctagagtgaattcatggatgggtgtgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagt 140  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53813 aagaacgaagccactcaccgctctggagtgaattcatggatgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagt 53912  T
Q  141 aagtattgtatcactattaggagcaacatcatcagccacaaattattcctatcttaaatgttttgatcctctttggtaatttggtcagtactcatttact 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  53913 aagtattgtatcactattaggagcaacatcatcagccacaaattattcctatcttaaatgttttgatcctctttggtaattttgtcagtactcatttact 54012  T
Q  241 aagacttagtaatattcaatttcatctc 268  Q
    |||||||  |||||||||||||||||||    
T  54013 aagactt--taatattcaatttcatctc 54038  T

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Target: scaffold0016; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 51246 - 51290
Alignment:
Q  1 agggtggtattatactatatcctctatgtgatgggcataaaagaa 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  51246 agggtggtattatactatatcctctatgtgatgggcataaaagaa 51290  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 15707421 - 15707358
Alignment:
Q  80 atgggtgtgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 143  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15707421 atgggtatgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 15707358  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15708863 - 15708819
Alignment:
Q  1 agggtggtattatactatatcctctatgtgatgggcataaaagaa 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  15708863 agggtggtattatactatatcctctatgtgatgggcataaaagaa 15708819  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 15707484 - 15707440
Alignment:
Q  41 aagaacgaagccactcaccgctctagagtgaattcatggatgggt 85  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  15707484 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 15707440  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 26795948 - 26795981
Alignment:
Q  12 atactatatcctctatgtgatgggcataaaagaa 45  Q
    ||||||||| ||||||||||||||||||||||||    
T  26795948 atactatatactctatgtgatgggcataaaagaa 26795981  T

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Target: scaffold1526 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 1249 - 1304
Alignment:
Q  88 gaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1249 gaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 1304  T

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Target: scaffold1526; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 1173 - 1217
Alignment:
Q  41 aagaacgaagccactcaccgctctagagtgaattcatggatgggt 85  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  1173 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 1217  T

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Target: scaffold0642 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 4165 - 4102
Alignment:
Q  80 atgggtgtgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 143  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4165 atgggtatgaatagagtgtgagagaagaagaaccggattggaatgatgttagagagaaagtaag 4102  T

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Target: scaffold0642; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6707 - 6663
Alignment:
Q  1 agggtggtattatactatatcctctatgtgatgggcataaaagaa 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6707 agggtggtattatactatatcctctatgtgatgggcataaaagaa 6663  T

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Target: scaffold0642; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 4228 - 4184
Alignment:
Q  41 aagaacgaagccactcaccgctctagagtgaattcatggatgggt 85  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  4228 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 4184  T

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Target: scaffold0345 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 14077 - 14014
Alignment:
Q  80 atgggtgtgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 143  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14077 atgggtatgaatagagtgtgagagaagaagaaccggattggaatgatgttagagagaaagtaag 14014  T

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Target: scaffold0345; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16620 - 16576
Alignment:
Q  1 agggtggtattatactatatcctctatgtgatgggcataaaagaa 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  16620 agggtggtattatactatatcctctatgtgatgggcataaaagaa 16576  T

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Target: scaffold0345; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 14140 - 14096
Alignment:
Q  41 aagaacgaagccactcaccgctctagagtgaattcatggatgggt 85  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  14140 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 14096  T

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Target: scaffold0105 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 80 - 143
Target Start/End: Original strand, 24904 - 24967
Alignment:
Q  80 atgggtgtgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 143  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24904 atgggtatgaatagagtgtgagagaagaagaaccggattggaatgatgttagagagaaagtaag 24967  T

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Target: scaffold0105; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 22362 - 22406
Alignment:
Q  1 agggtggtattatactatatcctctatgtgatgggcataaaagaa 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  22362 agggtggtattatactatatcctctatgtgatgggcataaaagaa 22406  T

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Target: scaffold0105; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 24841 - 24885
Alignment:
Q  41 aagaacgaagccactcaccgctctagagtgaattcatggatgggt 85  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  24841 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 24885  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 3378284 - 3378229
Alignment:
Q  88 gaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3378284 gaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 3378229  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3380927 - 3380883
Alignment:
Q  1 agggtggtattatactatatcctctatgtgatgggcataaaagaa 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  3380927 agggtggtattatactatatcctctatgtgatgggcataaaagaa 3380883  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 3378360 - 3378316
Alignment:
Q  41 aagaacgaagccactcaccgctctagagtgaattcatggatgggt 85  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  3378360 aagaacgaagccactcaccgatctggagtgaattcatggatgggt 3378316  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 44495567 - 44495504
Alignment:
Q  80 atgggtgtgaatagagtgtgagagaagaaggaccggattggaatgatgttagagagaaagtaag 143  Q
    |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44495567 atgggtatgaatggagtgtgagagaagaagaaccggattggaatgatgttagagagaaagtaag 44495504  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 44498189 - 44498151
Alignment:
Q  7 gtattatactatatcctctatgtgatgggcataaaagaa 45  Q
    |||||||||||||||||||||||||||||||||||||||    
T  44498189 gtattatactatatcctctatgtgatgggcataaaagaa 44498151  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 44495630 - 44495589
Alignment:
Q  41 aagaacgaagccactcaccgctctagagtgaattcatggatg 82  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  44495630 aagaacgaagccactcaccgatctggagtgaattcatggatg 44495589  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 21221922 - 21221835
Alignment:
Q  144 tattgtatcactattaggagcaacatcatcagccacaaattattcctatcttaaatgtt---ttgatcctctttggtaatttggtcag 228  Q
    |||| |||||||||||||||||||||||||||||||| || |||||||| || | ||||   ||||||||||||||||||||| ||||    
T  21221922 tattatatcactattaggagcaacatcatcagccacagataattcctattttcagtgttttcttgatcctctttggtaatttgttcag 21221835  T

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