View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_low_31 (Length: 266)
Name: NF9753_1D_low_31
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_31 |
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| [»] scaffold0642 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0642 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 25 - 256
Target Start/End: Complemental strand, 7222 - 6991
Alignment:
| Q |
25 |
tccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaatttta |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7222 |
tccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaatttta |
7123 |
T |
|
| Q |
125 |
actaagaaagggacaacaaacaattagatagccaaaatggtttcacttaagacatgtcggcataactaatattacgaaataatgctccttgattactttg |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7122 |
actaagaaagggacaacaaacaattagatagccaaaatggtttcactaaagagatgtcggcataactaatattaccaaataatgctccttgattactttg |
7023 |
T |
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| Q |
225 |
aatcttcaatcacggtccatggcattttagga |
256 |
Q |
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|||||||||||||| ||||||||||||||||| |
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| T |
7022 |
aatcttcaatcacgatccatggcattttagga |
6991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 25 - 256
Target Start/End: Complemental strand, 17135 - 16904
Alignment:
| Q |
25 |
tccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaatttta |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17135 |
tccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaatttta |
17036 |
T |
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| Q |
125 |
actaagaaagggacaacaaacaattagatagccaaaatggtttcacttaagacatgtcggcataactaatattacgaaataatgctccttgattactttg |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17035 |
actaagaaagggacaacaaacaattagatagccaaaatggtttcactaaagagatgtcggcataactaatattaccaaataatgctccttgattactttg |
16936 |
T |
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| Q |
225 |
aatcttcaatcacggtccatggcattttagga |
256 |
Q |
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|||||||||||||| ||||||||||||||||| |
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| T |
16935 |
aatcttcaatcacgatccatggcattttagga |
16904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 25 - 256
Target Start/End: Original strand, 21847 - 22078
Alignment:
| Q |
25 |
tccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaatttta |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21847 |
tccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaatttta |
21946 |
T |
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| Q |
125 |
actaagaaagggacaacaaacaattagatagccaaaatggtttcacttaagacatgtcggcataactaatattacgaaataatgctccttgattactttg |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21947 |
actaagaaagggacaacaaacaattagatagccaaaatggtttcactaaagagatgtcggcataactaatattaccaaataatgctccttgattactttg |
22046 |
T |
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| Q |
225 |
aatcttcaatcacggtccatggcattttagga |
256 |
Q |
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|||||||||||||| ||||||||||||||||| |
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| T |
22047 |
aatcttcaatcacgatccatggcattttagga |
22078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 50727 - 50960
Alignment:
| Q |
23 |
aatccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50727 |
aatccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattt |
50826 |
T |
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| Q |
123 |
taactaagaaagggacaacaaacaattagatagccaaaatggtttcacttaagacatgtcggcataactaatattacgaaataatgctccttgattactt |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
50827 |
taactaagaaagggacaacaaacaattagatagccaaaatggtttcactaaagagatgtcgacataactaatattaccaaataatgctccttgattactt |
50926 |
T |
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| Q |
223 |
tgaatcttcaatcacggtccatggcattttagga |
256 |
Q |
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|||||||||||||| | ||||||||||||||||| |
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| T |
50927 |
tgaatcttcaatcatgatccatggcattttagga |
50960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 23 - 256
Target Start/End: Complemental strand, 44498841 - 44498608
Alignment:
| Q |
23 |
aatccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44498841 |
aatccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattt |
44498742 |
T |
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| Q |
123 |
taactaagaaagggacaacaaacaattagatagccaaaatggtttcacttaagacatgtcggcataactaatattacgaaataatgctccttgattactt |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
44498741 |
taactaagaaagggacaacaaacaattagatagccaaaatggtttcactaaagagatgtcgacataactaatattaccaaataatgctccttgattactt |
44498642 |
T |
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| Q |
223 |
tgaatcttcaatcacggtccatggcattttagga |
256 |
Q |
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|||||||||||||| | ||||||||||||||||| |
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| T |
44498641 |
tgaatcttcaatcatgatccatggcattttagga |
44498608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 23 - 256
Target Start/End: Complemental strand, 3381430 - 3381207
Alignment:
| Q |
23 |
aatccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
3381430 |
aatccagcaaaaggtgcaaatacaaatttgtatctaaaatagttaacccagcccttacatatttcatacaaaatatgacaactccataaatggaaaattt |
3381331 |
T |
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| Q |
123 |
taactaagaaagggacaacaaacaattagatagccaaaatggtttcacttaagacatgtcggcataactaatattacgaaataatgctccttgattactt |
222 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
3381330 |
taact----------caacaaacaattagatagccaaaatggtttcactaaagacatgtcggcataactaatattaccaaacaatgctccttgattactt |
3381241 |
T |
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| Q |
223 |
tgaatcttcaatcacggtccatggcattttagga |
256 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
3381240 |
tgaatcttcaatcacgatccatggcattttagga |
3381207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 23 - 179
Target Start/End: Original strand, 30111893 - 30112048
Alignment:
| Q |
23 |
aatccagcaaaaggtgcaaatacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattt |
122 |
Q |
| |
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||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| | |||||||||||||||| |
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| T |
30111893 |
aatccagcaaaagttacaaatacaaatttgtatccaaaatagttaactcagcccttacattattcacacaaaatatgacaaat-cataaatggaaaattt |
30111991 |
T |
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| Q |
123 |
taactaagaaagggacaacaaacaattagatagccaaaatggtttcacttaagacat |
179 |
Q |
| |
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||||| ||||||| |||||| ||||||||||||||||| ||||||| ||||||| |
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| T |
30111992 |
caactacgaaagggtgaacaaaacattagatagccaaaatgatttcactaaagacat |
30112048 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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