View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_low_33 (Length: 256)
Name: NF9753_1D_low_33
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 10496571 - 10496339
Alignment:
| Q |
6 |
ttacactgtcataatgaacttcccggtcttaccctcgtattttttggccattcacttcagaagagaaagagaggcgtatcattgcttaatggtttaggtt |
105 |
Q |
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| T |
10496571 |
ttacactgtcataatgaacttcccggtcttacactcgtattttttggccattcacttcagaagagaaagagagacatatcattgctgaatgtttcaggtt |
10496472 |
T |
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| Q |
106 |
tgttttaatatccatgaaatggaatacgaaagttatctgaagcgccttcgtgtgcacgcgataatattaatggttttatgacttcttatactgccataac |
205 |
Q |
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| T |
10496471 |
tgttttaatatccatgaaatggaatacgaaagttatctgaagcgccttcatgtgcacgcaatagtattaatggttttatgacttcttatactgccataac |
10496372 |
T |
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| Q |
206 |
agccacattggatcaagcgtttgaatcaagatt |
238 |
Q |
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| T |
10496371 |
agccacattggatcaagcgtttgaatcaagatt |
10496339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 223
Target Start/End: Original strand, 8663425 - 8663597
Alignment:
| Q |
42 |
gtattttttggccattcacttcagaagagaaagagaggcgtatcattgcttaatggtttaggtttgttttaatatccatgaaatggaatacgaaagttat |
141 |
Q |
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| T |
8663425 |
gtattttttagccattcacttcagaagagaaagagagacatatcaatgttgaatgattcaggtttgtattaatatccattaaatggaatatgaaagttat |
8663524 |
T |
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| Q |
142 |
ctgaagcgccttcgtgtgcacgcgataatattaatggttttatgacttcttatactgccataacagccacattggatcaagc |
223 |
Q |
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| T |
8663525 |
ctgaat-gcgtccatgt--------ttctattaaaggttttatgacttcttatacttccataactgccacattcgatcaagc |
8663597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 146
Target Start/End: Complemental strand, 8672775 - 8672666
Alignment:
| Q |
37 |
ccctcgtattttttggccattcacttcagaagagaaagagaggcgtatcattgcttaatggtttaggtttgttttaatatccatgaaatggaatacgaaa |
136 |
Q |
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||||| |||||||| |||||||| |||||||||||||||||| | |||| ||| | |||| || |||||||||| ||||| || |||||||||| ||| |
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| T |
8672775 |
ccctcatattttttagccattcatttcagaagagaaagagagacatatcgttgttgaatgattctggtttgtttttatatctatcaaatggaatataaaa |
8672676 |
T |
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| Q |
137 |
gttatctgaa |
146 |
Q |
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| T |
8672675 |
gttatctgaa |
8672666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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