View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_low_4 (Length: 448)
Name: NF9753_1D_low_4
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 23 - 433
Target Start/End: Original strand, 34931416 - 34931826
Alignment:
| Q |
23 |
aggataacctccaatagcaagtatatggctaaaggaccaaataggtgttactacagcatcaagtttatttcttttcatcagtttctcaaacccattttgt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34931416 |
aggataacctccaatagcaagtatatggctaaaggaccaaataggtgttactacagcatcaagtttatttcttttcatcagtttctcaaacccattttgt |
34931515 |
T |
|
| Q |
123 |
gaccatcttgtcatgtttaataatgcttgtttttctgctttaccaattccatttgtcttttcagcttgcaccataacatcttggccatactcaagtttct |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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|
| T |
34931516 |
gaccatcttgtcatgtttaataatgcttgtttttctgctttaccaattccatttgtcttttcagcttgcaccatgacatcttggccatacccaagtttct |
34931615 |
T |
|
| Q |
223 |
cctacaatgtttatacaacaattaagatgctatcgtgatcgatgttaattaatgagaaatgctttatgtaacaaataggcatggcacaaatagtaacaat |
322 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34931616 |
cctacaatgtttgtacaacaattaagatgctatcgtgattgatgttaattaatgagaaatgctttatgtaacaaataggcatggcacaaatagtaacaat |
34931715 |
T |
|
| Q |
323 |
caaatgttatcagctgattcgtacagttcctgaagcacattgattgtnnnnnnntaacatagttcttatatacaatatacatactcaccaattttgggtg |
422 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34931716 |
caaatgttatcagctgattcgtacagttcgtgaagcacattgattgtaaaaaaataacatagttcttatatacaatatacatactcaccaattttgggtg |
34931815 |
T |
|
| Q |
423 |
tttcttgttga |
433 |
Q |
| |
|
||||||||||| |
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| T |
34931816 |
tttcttgttga |
34931826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 23 - 433
Target Start/End: Original strand, 34926509 - 34926912
Alignment:
| Q |
23 |
aggataacctccaatagcaagtatatggctaaaggaccaaataggtgttactacagcatcaagtttatttcttttcatcagtttctcaaacccattttgt |
122 |
Q |
| |
|
||||||||||||||| |||||||| | |||||||| | |||| |||| |||||||||||||||||||||||||||||||| ||||||||||| ||| |
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|
| T |
34926509 |
aggataacctccaatggcaagtatgttactaaaggatgccaaaggtattaccacagcatcaagtttatttcttttcatcagtttttcaaacccattctgt |
34926608 |
T |
|
| Q |
123 |
gaccatcttgtcatgtttaataatgcttgtttttctgctttaccaattccatttgtcttttcagcttgcaccataacatcttggccatactcaagtttct |
222 |
Q |
| |
|
||| |||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
34926609 |
gacgatcttgtcatatttaataatgcttgtttctctgctttcccaattccgtttgtcttttcagcttgcaccatgagatcttggccatactcaagtttct |
34926708 |
T |
|
| Q |
223 |
cctacaatgtttatacaacaattaagatgctatcgtgatcgatgttaattaatgagaaatgctttatgtaacaaataggcatggcacaaatagtaacaat |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| || || || ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34926709 |
cctacaatgtttatacaacaattaagatgctatcgtgatcaatgttcatagctg-ga----ctttatgtaacaaataggcatggcacaaatagtaacaat |
34926803 |
T |
|
| Q |
323 |
caaatgttatcagctgattcgtacagttcctgaagcacattgattgtnnnnnnntaacatagttcttatatacaatatacatactcaccaattttgggtg |
422 |
Q |
| |
|
||||||||||||| |||||| ||||| || ||||||| | || | || |||||||||||| |||| | ||||||||||||||| |||||||||| |
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| T |
34926804 |
caaatgttatcagttgattcttacag-tcgtgaagcaaactggtcgt-aaaaaataacatagttctaatattctatatacatactcaccgattttgggtg |
34926901 |
T |
|
| Q |
423 |
tttcttgttga |
433 |
Q |
| |
|
||||||||||| |
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|
| T |
34926902 |
tttcttgttga |
34926912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 34896321 - 34896559
Alignment:
| Q |
23 |
aggataacctccaatagcaagtatatggctaaaggaccaaataggtgttactacagcatcaagtttatttcttttcatcagtttctcaaacccattttgt |
122 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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|
| T |
34896321 |
aggataacctccaatagcaagtatgtgactaaaggaccaaaaaggtgttactacagcatcaagtttatttattttcatcagtttctcaaacccattttct |
34896420 |
T |
|
| Q |
123 |
gaccatcttgtcatgtttaataatgcttgtttttctgctttaccaattccatttgtcttttcagcttgcaccataacatcttggccatactcaagtttct |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |
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|
| T |
34896421 |
gaccatcttgtcatgtttaataatgcttgtttttctgctttaccaattccatttgtcttttcagcttgcaccatgacatcttggccatactccattttct |
34896520 |
T |
|
| Q |
223 |
cctacaatgtttatacaacaattaagatgctatcgtgat |
261 |
Q |
| |
|
||||||| |||||| |||||||||||| |||||||||| |
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|
| T |
34896521 |
cctacaacttttatataacaattaagatcctatcgtgat |
34896559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 23 - 274
Target Start/End: Original strand, 34909811 - 34910061
Alignment:
| Q |
23 |
aggataacctccaatagcaagtatatggctaaaggaccaaataggtgttactacagcatcaagtttatttcttttcatcagtttctcaaacccattttgt |
122 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||| |||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| | |
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|
| T |
34909811 |
aggataacctccaatagccagtatgtggctaaaggaccaaaaaggtgtcattacagcatcaagtttatttattttcatcagtttctcaaacccattttct |
34909910 |
T |
|
| Q |
123 |
gaccatcttgtcatgtttaataatgcttgtttttctgctttaccaattccatttgtcttttcagcttgcaccataacatcttggccatactcaagtttct |
222 |
Q |
| |
|
|||||||||| ||| || |||||||||| |||||||||||| |||| || |||||||||||||||||||||| ||||||||||||||||| | ||||| |
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|
| T |
34909911 |
gaccatcttgacatattcaataatgcttctttttctgctttcccaaaaccgtttgtcttttcagcttgcaccaatacatcttggccatactccattttct |
34910010 |
T |
|
| Q |
223 |
cctacaatgtttatacaacaattaagatgctatcgtgatcgatgttaattaa |
274 |
Q |
| |
|
|||||||| |||||||||||||| |||| |||| |||||| || |||||||| |
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|
| T |
34910011 |
cctacaat-tttatacaacaattcagattctatagtgatcaatattaattaa |
34910061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 23 - 246
Target Start/End: Original strand, 34919766 - 34919992
Alignment:
| Q |
23 |
aggataacctccaatagcaagtatatggctaaaggaccaaataggtgttactacagcatcaagtttatttcttttcatcagtttctcaaacccattttgt |
122 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||| ||| ||||| ||||||||||||| |||| |||| |||||||||||||||||||||| | |
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|
| T |
34919766 |
aggataacctccaatagcaagtatgctactaaaggatgaaaaaggcgttaccacagcatcaagttcatttgtttttatcagtttctcaaacccattttct |
34919865 |
T |
|
| Q |
123 |
gaccatcttgtcatgtttaataatgcttgtttttctgctttaccaattccatttgtcttttcagcttgcaccataacatcttggccatac---tcaagtt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | | | |||||||||||||||||||||||||||| ||| | ||||||||||||| ||||||| |
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|
| T |
34919866 |
gaccatcttgtcatgtttaataatgcttctttctgtatacttccaattccatttgtcttttcagcttgcaacatgatatcttggccatacttatcaagtt |
34919965 |
T |
|
| Q |
220 |
tctcctacaatgtttatacaacaatta |
246 |
Q |
| |
|
|||||||||| ||||||||||||||| |
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|
| T |
34919966 |
cctcctacaatttttatacaacaatta |
34919992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 34914075 - 34914153
Alignment:
| Q |
25 |
gataacctccaatagcaagtatatggctaaaggaccaaataggtgttactacagcatcaagtttatttcttttcatcag |
103 |
Q |
| |
|
|||||||||||||||||||||| |||||| | ||| ||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
34914075 |
gataacctccaatagcaagtatgctactaaagaatgaaaaaggtgttaccacaggatcaagtttatttattttcatcag |
34914153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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