View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_1D_low_40 (Length: 241)

Name: NF9753_1D_low_40
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_1D_low_40
NF9753_1D_low_40
[»] chr3 (7 HSPs)
chr3 (1-241)||(31825495-31825743)
chr3 (2-220)||(24919853-24920071)
chr3 (2-212)||(24923435-24923645)
chr3 (2-204)||(24982043-24982245)
chr3 (1-202)||(25085034-25085235)
chr3 (2-213)||(24497233-24497444)
chr3 (1-202)||(21584582-21584783)
[»] chr7 (4 HSPs)
chr7 (1-196)||(10575383-10575578)
chr7 (8-194)||(39954838-39955024)
chr7 (1-147)||(354400-354547)
chr7 (1-79)||(10580783-10580861)
[»] chr8 (1 HSPs)
chr8 (1-214)||(14261005-14261218)
[»] chr2 (1 HSPs)
chr2 (29-186)||(41027596-41027753)
[»] chr4 (3 HSPs)
chr4 (5-186)||(22898553-22898734)
chr4 (5-186)||(22950221-22950402)
chr4 (8-171)||(53328717-53328880)
[»] chr5 (1 HSPs)
chr5 (23-183)||(26358552-26358712)


Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 31825743 - 31825495
Alignment:
Q  1 gagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31825743 gagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaactagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcaca 31825644  T
Q  101 tacactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttgatgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31825643 tacactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttgatgaa 31825544  T
Q  201 gaagaag--------aagaagtagcactcttttgtgtagtattatttag 241  Q
    |||||||        ||||||||||||||||||||||| |||| |||||    
T  31825543 gaagaagaagagaagaagaagtagcactcttttgtgtattattgtttag 31825495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 24920071 - 24919853
Alignment:
Q  2 agaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacat 101  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||    
T  24920071 agaagaggtggtgtgaagagaatcagcggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttagagaatgtcattcgtgatgctgtgacat 24919972  T
Q  102 acactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttgatgaag 201  Q
    |||||||||||||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  24919971 acactgagcacgctaggaggaagacagtgacagccatggatgtcgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttgatgctg 24919872  T
Q  202 aagaagaagaagtagcact 220  Q
    |||| ||||||| ||||||    
T  24919871 aagatgaagaagaagcact 24919853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 2 - 212
Target Start/End: Complemental strand, 24923645 - 24923435
Alignment:
Q  2 agaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacat 101  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||    
T  24923645 agaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgctgtgacat 24923546  T
Q  102 acactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttgatgaag 201  Q
    ||||||||||||| |||||||||||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||     
T  24923545 acactgagcacgcaaggaggaagacagtgacagccatggatgttgtctatgctttgaagagacagggaagaaccctctatggatttggaggttgaagaat 24923446  T
Q  202 aagaagaagaa 212  Q
    | |||||||||    
T  24923445 atgaagaagaa 24923435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 2 - 204
Target Start/End: Original strand, 24982043 - 24982245
Alignment:
Q  2 agaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacat 101  Q
    |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  24982043 agaagaggtggtgttaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacat 24982142  T
Q  102 acactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttgatgaag 201  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||| ||||    
T  24982143 acactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaag 24982242  T
Q  202 aag 204  Q
    |||    
T  24982243 aag 24982245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 25085034 - 25085235
Alignment:
Q  1 gagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcaca 100  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||    
T  25085034 gagaagaggtggtgtgaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttaca 25085133  T
Q  101 tacactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttgatgaa 200  Q
    |||||||||||||| ||||||||||| || || || |||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| |||    
T  25085134 tacactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacagggaagaaccctctatggttttggaggttgaagaa 25085233  T
Q  201 ga 202  Q
    ||    
T  25085234 ga 25085235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 2 - 213
Target Start/End: Complemental strand, 24497444 - 24497233
Alignment:
Q  2 agaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacat 101  Q
    |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||||    
T  24497444 agaagaggtggtgttaagagaatcagtggattgatctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtgatccgtgatgcagttacat 24497345  T
Q  102 acactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttgatgaag 201  Q
    ||||||||||||| ||||||||||| || || || |||||||||||||||||||||||||| || ||||||||||||||||| || ||||||||||||||    
T  24497344 acactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggttttggaggttgatgaag 24497245  T
Q  202 aagaagaagaag 213  Q
    || || ||||||    
T  24497244 aaaaacaagaag 24497233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 21584783 - 21584582
Alignment:
Q  1 gagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcaca 100  Q
    ||||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||| ||  | ||||| |||||||||||||| || ||||||||||| ||     
T  21584783 gagaagaggtggtgttaagagaatcagtggtttgatttatgaggaaacaagaggagttcttaagattttcttggagaatgtgattcgtgatgcggttacg 21584684  T
Q  101 tacactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttgatgaa 200  Q
    ||||||||||| || ||||||||||| || || || ||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||| |||    
T  21584683 tacactgagcatgcaaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgctttatggattcggaggttgaagaa 21584584  T
Q  201 ga 202  Q
    ||    
T  21584583 ga 21584582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 10575383 - 10575578
Alignment:
Q  1 gagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcaca 100  Q
    ||||||||| |||||||| || |||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||  | ||||| || ||     
T  10575383 gagaagaggaggtgtgaaaagaatcagtggattgatctatgaggaaacaagaggtgtgttgaagatcttcttggagaatgttataagagatgctgttact 10575482  T
Q  101 tacactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttga 196  Q
    ||||||||||| || |||||||| || || || || ||||||||||| || ||  | ||||| || ||||||||||||||||| ||||| ||||||    
T  10575483 tacactgagcatgcgaggaggaaaactgtgactgctatggatgttgtttacgcgcttaagagacaaggaagaaccctctatggtttcggtggttga 10575578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 39955024 - 39954838
Alignment:
Q  8 ggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactg 107  Q
    |||||||||||||| ||||| ||| | ||||| ||||| ||  | |||||  | ||||||||  | |||||||| || |||||||| || || |||||||    
T  39955024 ggtggtgtgaagagaatcagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgctgttacttacactg 39954925  T
Q  108 agcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggaggtt 194  Q
    |||| ||||||||||| || |||||||| ||||||||||| |||||| | |||||||||||||| || ||||| || ||||| ||||    
T  39954924 agcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtt 39954838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 354400 - 354547
Alignment:
Q  1 gagaagaggtggtgtgaagaggatcagtgg-tttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcac 99  Q
    |||||||||||||||||||||||||||||| ||| |||||||| ||||  ||||| || |||||||| |||||| ||||||  ||  ||||||| || ||    
T  354400 gagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttac 354499  T
Q  100 atacactgagcacgctaggaggaagacagttaccgcgatggatgttgt 147  Q
     ||||||||||| || |||||||||||  | || || |||||||||||    
T  354500 ttacactgagcatgcaaggaggaagactctgactgctatggatgttgt 354547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 10580783 - 10580861
Alignment:
Q  1 gagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaat 79  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||  |||||  | |||||||| |||||| |||||    
T  10580783 gagaagagttggtgtgaagaggatcagtggtttgatctatgaggaaataagaggactgttgaagattttcttgcagaat 10580861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 14261218 - 14261005
Alignment:
Q  1 gagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcaca 100  Q
    ||||||||| ||||||||||| ||||| || ||||| |||||||||||  | ||||| |||||||| |||||||||||||| ||  | ||||| || ||     
T  14261218 gagaagaggaggtgtgaagagaatcagcgggttgatttatgaagaaactcgcggtgtgttgaagattttcttggagaatgtgataagagatgctgttacg 14261119  T
Q  101 tacactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttgatgaa 200  Q
    || ||||| || || ||||||||||| ||||| || ||||||||||| ||||| |||||||| || ||||| ||  | ||||| |||||||||||| |||    
T  14261118 tatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggactttgtatggtttcggaggttgaagaa 14261019  T
Q  201 gaagaagaagaagt 214  Q
    || || ||||||||    
T  14261018 gatgatgaagaagt 14261005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 41027596 - 41027753
Alignment:
Q  29 ggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcacgctaggaggaagacag 128  Q
    ||||||||||| ||||| ||  | || || ||||||||||| ||||||||||| || |||||||| || || ||||| |||||||||||||| ||||| |    
T  41027596 ggtttgatctacgaagagacacgtggcgtgttgaagatctttttggagaatgttattcgtgatgctgttacttacacagagcacgctaggagaaagactg 41027695  T
Q  129 ttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggatt 186  Q
    |||| || ||||||||||| ||||| |||||||| || ||||| || || ||||||||    
T  41027696 ttactgctatggatgttgtttatgcattgaagagacaaggaaggactctttatggatt 41027753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 186
Target Start/End: Original strand, 22898553 - 22898734
Alignment:
Q  5 agaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacataca 104  Q
    ||||| || |||||| | |||||||||||||| ||||| || ||  | || || |||||||| || ||||||||||| ||  | ||||| || || ||||    
T  22898553 agaggaggagtgaagcgtatcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttaca 22898652  T
Q  105 ctgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggatt 186  Q
    ||||||||||||| |||||||| ||||| || |||||||| || |||||  | ||||| |||||||||||||| || |||||    
T  22898653 ctgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctcaagagacagggaagaaccctttacggatt 22898734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 186
Target Start/End: Original strand, 22950221 - 22950402
Alignment:
Q  5 agaggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacataca 104  Q
    ||||| || |||||| | |||||||||||||| ||||| || ||  | || || |||||||| || ||||||||||| ||  | ||||| || || ||||    
T  22950221 agaggaggagtgaagcgtatcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttaca 22950320  T
Q  105 ctgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggatt 186  Q
    ||||||||||||| |||||||| ||||| || |||||||| || |||||  | ||||| |||||||||||||| || |||||    
T  22950321 ctgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctcaagagacagggaagaaccctttacggatt 22950402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 53328717 - 53328880
Alignment:
Q  8 ggtggtgtgaagaggatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactg 107  Q
    |||||||||||| | |||||||| || ||||||||||||||  | || ||  | ||||||||  | |||||||| || |||||||| ||||||||||| |    
T  53328717 ggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgctgtcacatacacag 53328816  T
Q  108 agcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaag 171  Q
    |||| ||| |  | ||||| ||||| || ||||||||||| || ||| | ||||||||||||||    
T  53328817 agcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaagaggcagggaag 53328880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 26358712 - 26358552
Alignment:
Q  23 atcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcacgctaggagga 122  Q
    ||||||||| ||||||||||||||||  | |||||  | ||||| ||  | |||||||| || |||||||| ||||| |||||||| || ||| |  | |    
T  26358712 atcagtggtctgatctatgaagaaactcgtggtgttctcaagatatttcttgagaatgttattcgtgatgctgtcacttacactgaacatgctcgtcgca 26358613  T
Q  123 agacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatgg 183  Q
    | |||||||| || ||||||||||| |||||  | |||||||| ||||| ||||| |||||    
T  26358612 aaacagttactgctatggatgttgtttatgcgctcaagaggcaaggaaggaccctttatgg 26358552  T

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