View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_low_41 (Length: 240)
Name: NF9753_1D_low_41
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 53930335 - 53930532
Alignment:
| Q |
17 |
ttttggagctgcaaaacaatgccaagatgatttttgttattgaagaacttgtaattttgtagcttttttattttattcagtcagttaatcaaacttgagc |
116 |
Q |
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| T |
53930335 |
ttttggagctgcaaaacaatgccaagatgatttttgttattgaagaacttgtaattttgtagcttttttattttattcagtccgttaatcaaacttgagc |
53930434 |
T |
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| Q |
117 |
tgttagactaaacatttttacttcttatttgattgtggagttgttgttttccctttatcaatcactggaattataaattggacgtcggcgtctttttg |
214 |
Q |
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| T |
53930435 |
tgttagactaaacatttttacttcttatttggttgtggagttattgttttccctttatcaatcactggaattataaattggacgtcggcgtctttttg |
53930532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 34015321 - 34015374
Alignment:
| Q |
23 |
agctgcaaaacaatgccaagatgatttttgttattgaagaacttgtaattttgt |
76 |
Q |
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| T |
34015321 |
agctgcaaaacgatgccaggatgattttagttattgaagaacttataattttgt |
34015374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 268541 - 268734
Alignment:
| Q |
21 |
ggagctgcaaaacaatgccaagatgatttttgttattgaagaacttgtaattttgtagcttttttattttattcagtcagttaatcaaacttgagctgtt |
120 |
Q |
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| T |
268541 |
ggagctgcaaaatgttgccaggatgattttagttattaaagaacttataatgttgtggcttttttattttattcagtcagttaatcaaacttgagttgtt |
268640 |
T |
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| Q |
121 |
agactaaacatttttacttcttatttgattgtggagttgttgttttccctttatcaatcactggaattataaattggacgtcggcgtctttttg |
214 |
Q |
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| T |
268641 |
actaaaaacatatttacttcctacttggttgtggagttgttattttctctttatccatcactagaattataaatttgatgttggcatctttttg |
268734 |
T |
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