View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_1D_low_42 (Length: 240)

Name: NF9753_1D_low_42
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_1D_low_42
NF9753_1D_low_42
[»] chr8 (6 HSPs)
chr8 (7-149)||(1668328-1668470)
chr8 (7-149)||(16659043-16659185)
chr8 (7-149)||(38520980-38521122)
chr8 (7-149)||(22015058-22015200)
chr8 (144-224)||(43744617-43744697)
chr8 (151-236)||(12528293-12528378)
[»] chr4 (6 HSPs)
chr4 (7-149)||(23217974-23218116)
chr4 (7-149)||(45144173-45144315)
chr4 (7-149)||(45152942-45153084)
chr4 (144-240)||(35132241-35132338)
chr4 (7-52)||(13740163-13740208)
chr4 (144-236)||(30775041-30775133)
[»] chr3 (3 HSPs)
chr3 (7-149)||(2338570-2338712)
chr3 (7-149)||(52893632-52893774)
chr3 (7-50)||(21239622-21239665)
[»] chr2 (10 HSPs)
chr2 (7-149)||(3935126-3935268)
chr2 (7-131)||(38978178-38978302)
chr2 (35-149)||(43189190-43189304)
chr2 (147-240)||(14703193-14703286)
chr2 (144-240)||(7542011-7542107)
chr2 (144-240)||(12234474-12234570)
chr2 (147-221)||(16662282-16662356)
chr2 (144-240)||(12258868-12258964)
chr2 (147-223)||(43625214-43625290)
chr2 (144-240)||(11999192-11999288)
[»] chr5 (1 HSPs)
chr5 (7-149)||(3174387-3174529)
[»] chr1 (2 HSPs)
chr1 (144-198)||(52549299-52549353)
chr1 (147-236)||(15594823-15594912)
[»] chr7 (13 HSPs)
chr7 (144-240)||(17267724-17267820)
chr7 (144-240)||(6789297-6789393)
chr7 (144-236)||(8616470-8616562)
chr7 (144-240)||(27831162-27831258)
chr7 (153-240)||(8383172-8383259)
chr7 (144-201)||(8659187-8659244)
chr7 (147-240)||(17260026-17260119)
chr7 (144-240)||(8576111-8576207)
chr7 (144-214)||(8585993-8586063)
chr7 (151-240)||(8545418-8545507)
chr7 (144-240)||(8570096-8570192)
chr7 (157-237)||(8601762-8601842)
chr7 (192-240)||(7878068-7878116)


Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 1668328 - 1668470
Alignment:
Q  7 aattgataaattcataattgcacaacctttactctctttacaaagannnnnnngttaatcatagttttgatcatagcctagtgatggtttcactttctaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  1668328 aattgataaattcataattgcacaacctttactctctttacaaagatttttttgttaatcatagttttgatcatagcctagtgatggtttcactttctaa 1668427  T
Q  107 tgaaattacttgtttaagtctttgtggtaaattcttggaggaa 149  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1668428 tgaaattacttgtttaagtctttgtggtaaattcttggaggaa 1668470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 16659043 - 16659185
Alignment:
Q  7 aattgataaattcataattgcacaacctttactctctttacaaagannnnnnngttaatcatagttttgatcatagcctagtgatggtttcactttctaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  16659043 aattgataaattcataattgcacaacctttactctctttacaaagatttttttgttaatcatagttttgatcatagcctagtgatggtttcactttctaa 16659142  T
Q  107 tgaaattacttgtttaagtctttgtggtaaattcttggaggaa 149  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  16659143 tgaaattacttgtttaagtctttgtggtaaattcttggaggaa 16659185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 38521122 - 38520980
Alignment:
Q  7 aattgataaattcataattgcacaacctttactctctttacaaagannnnnnngttaatcatagttttgatcatagcctagtgatggtttcactttctaa 106  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||       ||||||||||||||| |||||||||||||||||||||||||||||||    
T  38521122 aattgataaatttataattgcataacctttactctctttacaaagatttttttgttaatcatagttttaatcatagcctagtgatggtttcactttctaa 38521023  T
Q  107 tgaaattacttgtttaagtctttgtggtaaattcttggaggaa 149  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38521022 tgaaattacttgtttaagtctttgtggtaaattcttggaggaa 38520980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 22015058 - 22015200
Alignment:
Q  7 aattgataaattcataattgcacaacctttactctctttacaaagannnnnnngttaatcatagttttgatcatagcctagtgatggtttcactttctaa 106  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||        |||||||||||||| |||||||||||||||| ||||||||||||||    
T  22015058 aattgataaattcataattgcataacctttactctctttactaagatttattttttaatcatagttttaatcatagcctagtgatagtttcactttctaa 22015157  T
Q  107 tgaaattacttgtttaagtctttgtggtaaattcttggaggaa 149  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  22015158 tgaaattacttgtttaagtctttgtggtaaaatcttggaggaa 22015200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 43744697 - 43744617
Alignment:
Q  144 gaggaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagatggacaagagc 224  Q
    |||||||| |||||||| || || || |||||| |||| |||||||| |||||||||| |||||| |||||||||||||||    
T  43744697 gaggaaatcaatatggatctcttcaacgagtgtttgaaaattgttgagagttgtcttactgatgccaagatggacaagagc 43744617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 12528378 - 12528293
Alignment:
Q  151 tgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagatggacaagagcagggtagatgat 236  Q
    ||||||||||||| ||| |  |||||||| |||  |||||||||||| | |  |||||||||||||||||||| || |||||||||    
T  12528378 tgaatatggacctctttgaaaagtgtatggagaccgttgaaagttgtttgaccgatgctaagatggacaagagtagtgtagatgat 12528293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 23218116 - 23217974
Alignment:
Q  7 aattgataaattcataattgcacaacctttactctctttacaaagannnnnnngttaatcatagttttgatcatagcctagtgatggtttcactttctaa 106  Q
    |||||||||||||||||||||| |||||||||||||||||||||||       ||||||||||||||| |||||||||||||||||||||||||||||||    
T  23218116 aattgataaattcataattgcataacctttactctctttacaaagatttttttgttaatcatagttttaatcatagcctagtgatggtttcactttctaa 23218017  T
Q  107 tgaaattacttgtttaagtctttgtggtaaattcttggaggaa 149  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23218016 tgaaattacttgtttaagtctttgtggtaaattcttggaggaa 23217974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 45144173 - 45144315
Alignment:
Q  7 aattgataaattcataattgcacaacctttactctctttacaaagannnnnnngttaatcatagttttgatcatagcctagtgatggtttcactttctaa 106  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| |       ||||||||||||||| |||||||||||||||||||||||||||||||    
T  45144173 aattgataaattcataattgcataacatttactctctttacaaatatttttttgttaatcatagttttaatcatagcctagtgatggtttcactttctaa 45144272  T
Q  107 tgaaattacttgtttaagtctttgtggtaaattcttggaggaa 149  Q
    |||||||||||  ||||||||||||||||||||||||||||||    
T  45144273 tgaaattacttagttaagtctttgtggtaaattcttggaggaa 45144315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 45152942 - 45153084
Alignment:
Q  7 aattgataaattcataattgcacaacctttactctctttacaaagannnnnnngttaatcatagttttgatcatagcctagtgatggtttcactttctaa 106  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| |       ||||||||||||||| |||||||||||||||||||||||||||||||    
T  45152942 aattgataaattcataattgcataacatttactctctttacaaatatttttttgttaatcatagttttaatcatagcctagtgatggtttcactttctaa 45153041  T
Q  107 tgaaattacttgtttaagtctttgtggtaaattcttggaggaa 149  Q
    |||||||||||  ||||||||||||||||||||||||||||||    
T  45153042 tgaaattacttaattaagtctttgtggtaaattcttggaggaa 45153084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 35132338 - 35132241
Alignment:
Q  144 gaggaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagatggacaagagc-agggtagatgatgttg 240  Q
    ||||||||||||   ||||||||||| ||||||||||| |  || || |||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  35132338 gaggaaatgaatgcagacctttttaatgagtgtatgaataccgtagagagttgtctcattgatgctaagatggacaagagcaagggtagatgatgttg 35132241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 13740208 - 13740163
Alignment:
Q  7 aattgataaattcataattgcacaacctttactctctttacaaaga 52  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  13740208 aattgataaattcataattgcataacctttactctctttacaaaga 13740163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 30775133 - 30775041
Alignment:
Q  144 gaggaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagatggacaagagcagggtagatgat 236  Q
    |||||||| ||||||||||||||||| ||||||||  ||| |||||| |||||||||| |||| | ||| | |||||||| || |||||||||    
T  30775133 gaggaaatcaatatggacctttttaatgagtgtatacagactgttgagagttgtcttactgattcaaaggtagacaagagtagtgtagatgat 30775041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 2338712 - 2338570
Alignment:
Q  7 aattgataaattcataattgcacaacctttactctctttacaaagannnnnnngttaatcatagttttgatcatagcctagtgatggtttcactttctaa 106  Q
    |||||||||||||||||||||| |||||||||||||||||||||||       ||||||||||||||| |||||||||||||||||||||||||||||||    
T  2338712 aattgataaattcataattgcataacctttactctctttacaaagatttttttgttaatcatagttttaatcatagcctagtgatggtttcactttctaa 2338613  T
Q  107 tgaaattacttgtttaagtctttgtggtaaattcttggaggaa 149  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  2338612 tgaaattacttgtttaagtctttgtggtaaattcttggaggaa 2338570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 52893632 - 52893774
Alignment:
Q  7 aattgataaattcataattgcacaacctttactctctttacaaagannnnnnngttaatcatagttttgatcatagcctagtgatggtttcactttctaa 106  Q
    |||||||||||||||||||||| |||||||||||||||||||||||       ||||||||||||||| |||||||||||||||||||||||||||||||    
T  52893632 aattgataaattcataattgcataacctttactctctttacaaagatttttttgttaatcatagttttaatcatagcctagtgatggtttcactttctaa 52893731  T
Q  107 tgaaattacttgtttaagtctttgtggtaaattcttggaggaa 149  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  52893732 tgaaattacttggttaagtctttgtggtaaattcttggaggaa 52893774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 21239622 - 21239665
Alignment:
Q  7 aattgataaattcataattgcacaacctttactctctttacaaa 50  Q
    |||||||||||| ||||||||| |||||||||||||||||||||    
T  21239622 aattgataaatttataattgcataacctttactctctttacaaa 21239665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 3935268 - 3935126
Alignment:
Q  7 aattgataaattcataattgcacaacctttactctctttacaaagannnnnnngttaatcatagttttgatcatagcctagtgatggtttcactttctaa 106  Q
    |||||||||||||||||||||| |||||||||||||||||||||||       ||||||||||||||| |||||||||||||||||||||||||||||||    
T  3935268 aattgataaattcataattgcataacctttactctctttacaaagatttttttgttaatcatagttttaatcatagcctagtgatggtttcactttctaa 3935169  T
Q  107 tgaaattacttgtttaagtctttgtggtaaattcttggaggaa 149  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  3935168 tgaaactacttgtttaagtctttgtggtaaattcttggaggaa 3935126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 38978302 - 38978178
Alignment:
Q  7 aattgataaattcataattgcacaacctttactctctttacaaagannnnnnngttaatcatagttttgatcatagcctagtgatggtttcactttctaa 106  Q
    |||||||||||||||||||||| |||||||||||||||||||||||       ||||||| ||||||| |||||||||||||||||||||||||||||||    
T  38978302 aattgataaattcataattgcataacctttactctctttacaaagatttttttgttaatcgtagttttaatcatagcctagtgatggtttcactttctaa 38978203  T
Q  107 tgaaattacttgtttaagtctttgt 131  Q
    |||||||||||| ||||||||||||    
T  38978202 tgaaattacttggttaagtctttgt 38978178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 43189190 - 43189304
Alignment:
Q  35 ttactctctttacaaagannnnnnngttaatcatagttttgatcatagcctagtgatggtttcactttctaatgaaattacttgtttaagtc-tttgtgg 133  Q
    ||||||||||||||||||       ||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  43189190 ttactctctttacaaagatttttttgttaatcatggttttaatcatagcctagtgatggtttcactttctaatgaaa-tacttgtttaagtcttttgtgg 43189288  T
Q  134 taaattcttggaggaa 149  Q
    ||||||||||||||||    
T  43189289 taaattcttggaggaa 43189304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 14703286 - 14703193
Alignment:
Q  147 gaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagatggacaagagcagggtagatgatgttg 240  Q
    ||||||||||||||| ||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||    
T  14703286 gaaatgaatatggacttttttaatgagtgtgtgaagattgttgagagttgtcttattgatgctaagatggacaagagtagagtagatgatgttg 14703193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 7542107 - 7542011
Alignment:
Q  144 gaggaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagatggacaagagcagggtagatgatgttg 240  Q
    ||||| ||||||||||| |||||||| |||||||||| |||||||| ||| ||||||||||||||||| ||||||||||||| | ||||||||||||    
T  7542107 gaggagatgaatatggatctttttaacgagtgtatgacgattgttggaagctgtcttattgatgctaatatggacaagagcatgatagatgatgttg 7542011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 12234570 - 12234474
Alignment:
Q  144 gaggaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagatggacaagagcagggtagatgatgttg 240  Q
    ||||||||||||||||| ||| |||  |||||||||||||||||||| |||||||||| |||||||||||||||||| || ||||| ||||| ||||    
T  12234570 gaggaaatgaatatggatcttcttattgagtgtatgaagattgttgagagttgtcttagtgatgctaagatggacaaaagtagggtggatgaagttg 12234474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 16662282 - 16662356
Alignment:
Q  147 gaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagatggacaag 221  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||| |||||| || | ||| | ||||||||||||    
T  16662282 gaaatcaatatgggcctttttaacgagtgtatgaagattgttgagagttgttttgtggattcaaagatggacaag 16662356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 12258868 - 12258964
Alignment:
Q  144 gaggaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagatggacaagagcagggtagatgatgttg 240  Q
    |||||||| ||| |||| ||||| || || || ||||||| |||||| ||||||||||  |||||||| | ||||||||| |  |||||||||||||    
T  12258868 gaggaaataaatttggaacttttcaatgaatgcatgaagactgttgagagttgtcttacggatgctaacacggacaagagtaatgtagatgatgttg 12258964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 43625290 - 43625214
Alignment:
Q  147 gaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagatggacaagag 223  Q
    ||||| |||||||| ||||| || |||||| |||| | |||| | ||||||||||||||||| ||| ||||||||||    
T  43625290 gaaataaatatggatcttttcaacgagtgtttgaaaactgttaagagttgtcttattgatgccaagttggacaagag 43625214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 11999288 - 11999192
Alignment:
Q  144 gaggaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagatggacaagagcagggtagatgatgttg 240  Q
    |||||| ||||| | || ||| |||| || ||||| |||| |||||| |||||| |||| ||||| |||||||||||||| |   ||||||||||||    
T  11999288 gaggaattgaatttagatcttcttaatgattgtataaagactgttgagagttgtattatggatgcaaagatggacaagagtactatagatgatgttg 11999192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 3174387 - 3174529
Alignment:
Q  7 aattgataaattcataattgcacaacctttactctctttacaaagannnnnnngttaatcatagttttgatcatagcctagtgatggtttcactttctaa 106  Q
    |||||||||||||||||||||| |||||||||||||||||||||||       ||||||||||||||| |||||||||||||||||||||||||||||||    
T  3174387 aattgataaattcataattgcataacctttactctctttacaaagatttttttgttaatcatagttttaatcatagcctagtgatggtttcactttctaa 3174486  T
Q  107 tgaaattacttgtttaagtctttgtggtaaattcttggaggaa 149  Q
     ||||||||||||||||||||||||| ||||||||||||||||    
T  3174487 agaaattacttgtttaagtctttgtgttaaattcttggaggaa 3174529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 52549299 - 52549353
Alignment:
Q  144 gaggaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtc 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549299 gaggaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtc 52549353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 15594912 - 15594823
Alignment:
Q  147 gaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagatggacaagagcagggtagatgat 236  Q
    ||||| || |||||| |||||||||| ||||||||||| ||||| |||||||||  ||||||||||||| | ||||| || ||| |||||    
T  15594912 gaaatcaacatggacttttttaaggattgtatgaagatagttgagagttgtcttgatgatgctaagatgaataagagtagtgtaaatgat 15594823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 17267820 - 17267724
Alignment:
Q  144 gaggaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagatggacaagagcagggtagatgatgttg 240  Q
    |||||||| ||||||||||||||| | ||||| ||| |||||||||| |  ||||||| |||||||||||| ||||||||||| || ||||||||||    
T  17267820 gaggaaatcaatatggacctttttgatgagtgcatggagattgttgagaagtgtcttagtgatgctaagattgacaagagcagagttgatgatgttg 17267724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 6789393 - 6789297
Alignment:
Q  144 gaggaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagatggacaagagcagggtagatgatgttg 240  Q
    |||||||| ||||||||  ||||||| |||||||||||||  ||||| ||||||||| |||| ||||||||||||||||| |  ||| |||||||||    
T  6789393 gaggaaatcaatatggatatttttaatgagtgtatgaagaccgttgagagttgtcttgttgacgctaagatggacaagagtattgtaaatgatgttg 6789297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 8616562 - 8616470
Alignment:
Q  144 gaggaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagatggacaagagcagggtagatgat 236  Q
    |||||||| ||||||||||||||||| |||||||| |||| |||||| |||||| ||| |||| ||||||| || ||||| || |||||||||    
T  8616562 gaggaaatcaatatggacctttttaacgagtgtataaagactgttgagagttgttttaatgattctaagatagagaagagtagtgtagatgat 8616470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 27831162 - 27831258
Alignment:
Q  144 gaggaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagatggacaagagcagggtagatgatgttg 240  Q
    |||||||| |||||||||||||| || || |||||| ||| |||||| |||||||| | |||  |||||||||||||||| ||  ||||||||||||    
T  27831162 gaggaaatcaatatggaccttttcaatgaatgtatggagactgttgagagttgtctcactgactctaagatggacaagagtagtatagatgatgttg 27831258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 8383172 - 8383259
Alignment:
Q  153 aatatggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagatggacaagagcagggtagatgatgttg 240  Q
    ||||||||||| ||| |  |||||||| ||| |||||| || ||||||| ||||||||||||| ||||||| || |||||||||||||    
T  8383172 aatatggacctatttgaaaagtgtatggagactgttgagagctgtcttactgatgctaagatgaacaagagtagtgtagatgatgttg 8383259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 8659244 - 8659187
Alignment:
Q  144 gaggaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtctta 201  Q
    ||||||||||||||||| |||||||| ||||||||||| | |||||| ||||||||||    
T  8659244 gaggaaatgaatatggatctttttaatgagtgtatgaaaactgttgagagttgtctta 8659187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 17260119 - 17260026
Alignment:
Q  147 gaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagatggacaagagcagggtagatgatgttg 240  Q
    ||||| ||||||||||||||| | ||||| ||| |||||||||| |  ||||||| ||||| |||||| |||||||||||  | ||||||||||    
T  17260119 gaaatcaatatggaccttttttatgagtgcatggagattgttgagaagtgtcttagtgatggtaagattgacaagagcagaattgatgatgttg 17260026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 8576207 - 8576111
Alignment:
Q  144 gaggaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagatggacaagagcagggtagatgatgttg 240  Q
    ||||||||||||||| |||| ||| |  |||||||||| | |||| | | |||||||  ||||||||||||||||||||  || |||||||||||||    
T  8576207 gaggaaatgaatatgaacctctttgaaaagtgtatgaatactgttaatatttgtcttgctgatgctaagatggacaagaatagtgtagatgatgttg 8576111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 8585993 - 8586063
Alignment:
Q  144 gaggaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagat 214  Q
    |||||||| ||||||||||||||||| |||||||| || | |||||| ||||||||||  ||| |||||||    
T  8585993 gaggaaatcaatatggacctttttaatgagtgtataaatactgttgagagttgtcttaccgattctaagat 8586063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 8545507 - 8545418
Alignment:
Q  151 tgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagatggacaagagcagggtagatgatgttg 240  Q
    ||||||||||||| ||| |  |||||||| | | |||| |  |||||||| |||||||||||||||||||| | || |||||||||||||    
T  8545507 tgaatatggacctctttgaaaagtgtatggacactgttaattgttgtcttgttgatgctaagatggacaagggtagtgtagatgatgttg 8545418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 8570192 - 8570096
Alignment:
Q  144 gaggaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagatggacaagagcagggtagatgatgttg 240  Q
    ||||||||||||||| |||| ||| |  |||||||| | | |||| | |||||||||  ||||||||||||||| ||||  || |||||||||||||    
T  8570192 gaggaaatgaatatgaacctctttgaaaagtgtatggaaactgttaatagttgtcttgctgatgctaagatggaaaagaatagtgtagatgatgttg 8570096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 8601842 - 8601762
Alignment:
Q  157 tggacctttttaaggagtgtatgaagattgttgaaagttgtcttattgatgctaagatggacaagagcagggtagatgatg 237  Q
    ||||||| |||||| |||||||  ||| ||||||||||||||||| ||||||| |||| || ||||| || || |||||||    
T  8601842 tggacctctttaagaagtgtatagagactgttgaaagttgtcttagtgatgctcagatcgaaaagagtagtgtggatgatg 8601762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 7878068 - 7878116
Alignment:
Q  192 agttgtcttattgatgctaagatggacaagagcagggtagatgatgttg 240  Q
    |||||||||| |||||||| ||||||||||| ||  |||||||||||||    
T  7878068 agttgtcttactgatgctatgatggacaagaacaatgtagatgatgttg 7878116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University