View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_1D_low_46 (Length: 229)

Name: NF9753_1D_low_46
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_1D_low_46
NF9753_1D_low_46
[»] chr2 (13 HSPs)
chr2 (1-193)||(5463691-5463883)
chr2 (8-193)||(34949113-34949293)
chr2 (28-187)||(41962327-41962486)
chr2 (5-193)||(15112653-15112841)
chr2 (8-193)||(5937696-5937875)
chr2 (5-190)||(21484504-21484683)
chr2 (1-82)||(45526779-45526860)
chr2 (51-183)||(37127255-37127381)
chr2 (120-193)||(45536321-45536394)
chr2 (105-179)||(5937838-5937911)
chr2 (126-193)||(24169087-24169154)
chr2 (124-186)||(18964105-18964166)
chr2 (105-179)||(34949077-34949150)
[»] chr4 (16 HSPs)
chr4 (1-193)||(55611694-55611886)
chr4 (3-193)||(47984991-47985182)
chr4 (1-193)||(53270018-53270210)
chr4 (1-187)||(40761671-40761857)
chr4 (1-193)||(53512161-53512354)
chr4 (3-193)||(45658834-45659024)
chr4 (1-193)||(40692286-40692479)
chr4 (3-177)||(47604404-47604579)
chr4 (5-192)||(52918762-52918949)
chr4 (5-185)||(38989980-38990160)
chr4 (12-193)||(11648344-11648520)
chr4 (49-151)||(34953105-34953202)
chr4 (49-193)||(49604884-49605019)
chr4 (9-71)||(44108725-44108787)
chr4 (49-96)||(45659059-45659106)
chr4 (52-96)||(40603158-40603202)
[»] chr3 (20 HSPs)
chr3 (1-193)||(16483490-16483682)
chr3 (1-177)||(9127664-9127840)
chr3 (1-177)||(9135771-9135947)
chr3 (1-193)||(21979196-21979383)
chr3 (1-193)||(22001627-22001814)
chr3 (1-193)||(47374075-47374267)
chr3 (1-193)||(30389551-30389744)
chr3 (56-193)||(44207065-44207202)
chr3 (1-186)||(48062819-48063004)
chr3 (3-192)||(49326625-49326814)
chr3 (1-193)||(18876765-18876952)
chr3 (4-192)||(41973880-41974066)
chr3 (1-192)||(8485738-8485929)
chr3 (5-191)||(51328202-51328382)
chr3 (52-187)||(10493959-10494089)
chr3 (49-179)||(48062739-48062863)
chr3 (122-179)||(9127652-9127708)
chr3 (122-179)||(9135759-9135815)
chr3 (49-97)||(23334273-23334321)
chr3 (126-186)||(53394578-53394637)
[»] chr1 (17 HSPs)
chr1 (5-193)||(3474574-3474762)
chr1 (8-193)||(7563865-7564055)
chr1 (49-193)||(14271011-14271155)
chr1 (1-186)||(5749225-5749410)
chr1 (28-193)||(39598872-39599037)
chr1 (1-192)||(12524220-12524409)
chr1 (5-192)||(10222528-10222714)
chr1 (1-113)||(10312574-10312686)
chr1 (1-113)||(4851959-4852071)
chr1 (106-189)||(30517698-30517781)
chr1 (127-192)||(10311907-10311972)
chr1 (127-192)||(18277275-18277340)
chr1 (120-180)||(4852094-4852154)
chr1 (105-179)||(7564018-7564091)
chr1 (106-173)||(21535076-21535143)
chr1 (122-193)||(6605058-6605128)
chr1 (122-179)||(4851947-4852003)
[»] chr7 (20 HSPs)
chr7 (1-192)||(7254702-7254892)
chr7 (1-192)||(38256778-38256970)
chr7 (1-192)||(38264353-38264545)
chr7 (1-193)||(26792626-26792819)
chr7 (1-192)||(109323-109514)
chr7 (5-192)||(35584372-35584559)
chr7 (1-192)||(43748512-43748703)
chr7 (1-186)||(33849410-33849594)
chr7 (49-186)||(45490773-45490910)
chr7 (49-192)||(37999351-37999494)
chr7 (30-185)||(1378109-1378259)
chr7 (3-132)||(24686869-24686991)
chr7 (6-154)||(29331632-29331779)
chr7 (120-187)||(15031917-15031984)
chr7 (49-183)||(1852686-1852814)
chr7 (122-191)||(19647738-19647806)
chr7 (1-81)||(15031993-15032073)
chr7 (1-80)||(26187577-26187656)
chr7 (49-100)||(31326173-31326224)
chr7 (49-179)||(109243-109367)
[»] chr5 (8 HSPs)
chr5 (1-187)||(6431726-6431912)
chr5 (1-193)||(32747480-32747672)
chr5 (49-193)||(5343177-5343321)
chr5 (1-192)||(24855233-24855426)
chr5 (106-193)||(41615598-41615685)
chr5 (49-187)||(23248149-23248281)
chr5 (1-75)||(1709824-1709898)
chr5 (124-186)||(27949349-27949410)
[»] chr8 (4 HSPs)
chr8 (4-184)||(24831390-24831570)
chr8 (5-192)||(11036-11223)
chr8 (12-193)||(41835333-41835509)
chr8 (49-175)||(11457558-11457678)
[»] chr6 (4 HSPs)
chr6 (1-193)||(13037520-13037712)
chr6 (49-188)||(20819223-20819356)
chr6 (48-182)||(17520394-17520522)
chr6 (126-186)||(3513976-3514035)
[»] scaffold0054 (1 HSPs)
scaffold0054 (30-191)||(18280-18436)
[»] scaffold0168 (1 HSPs)
scaffold0168 (20-192)||(16239-16410)
[»] scaffold0160 (1 HSPs)
scaffold0160 (66-186)||(16650-16765)
[»] scaffold0001 (1 HSPs)
scaffold0001 (105-190)||(426613-426697)


Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 5463883 - 5463691
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||||||||||||||| ||||||||| |||||||| |||| || ||| ||||||||||||| |||||| ||||||||||| |||||  ||||||||||||    
T  5463883 tcagcacaatgacaaaaatttgcatggtctctttggtgtgcttgtttgtatttttgacagcatgctgaggatcttcatcatgcagtctaatagagagcta 5463784  T
Q  101 actcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||| |||||    
T  5463783 actcatctatttgcgaccgcatgagaaagatcctcagcttaatgacaaaaatatgcatggttttctttggtgtgtttgtgtgttttgatggta 5463691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 34949113 - 34949293
Alignment:
Q  8 aatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatc 107  Q
    ||||| ||| ||||||||| |||||||| ||||||| ||| ||||||||||||| ||||||||||||||||||||| || |||||||||||||     ||    
T  34949113 aatgaaaaaaatttgcatggtctctttggtgtgtttgtttgtatttttgacagcatgctgaagatcttcatcacgctgtcaaatagagagcta-----tc 34949207  T
Q  108 tatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    |||||  |||   ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  34949208 tatttacgacaatgtgagaaagatcctcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgctggta 34949293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 28 - 187
Target Start/End: Original strand, 41962327 - 41962486
Alignment:
Q  28 tctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatttgtgaccgcgtgagaa 127  Q
    |||||||| |||| || ||| ||||||||||||| |||||| |||||||||||  |||| |||||||||||||||||||||||||| |||||| ||||||    
T  41962327 tctctttggtgtggttgtttgtatttttgacagcatgctgaggatcttcatcatacagtcaaatagagagctaactcatctatttgcgaccgcatgagaa 41962426  T
Q  128 agatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttg 187  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||||||||| |||||||    
T  41962427 agatcctcagcttaatgacaaaagtttgcatggttttctttggtgtgtttgtatgttttg 41962486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 193
Target Start/End: Complemental strand, 15112841 - 15112653
Alignment:
Q  5 cacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactc 104  Q
    |||||||||||| ||||||||| |||||||  ||||||| ||| || |||||||||| ||  |||||||||||||||||  | ||||||||||  || ||    
T  15112841 cacaatgacaaaaatttgcatggtctctttagtgtgtttgtttgtaattttgacagcatgtagaagatcttcatcacgccatcaaatagagagaaaattc 15112742  T
Q  105 atctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    ||||||||| |||  |||||| |||||||||| |||||||||||||||||  |||||||||||||||||||||| |||||||| |||||    
T  15112741 atctatttgcgacaacgtgaggaagatcctcaacttaatgacaaaaatttgcatggttttctttggtgtgtttgcgtgttttgatggta 15112653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 5937875 - 5937696
Alignment:
Q  8 aatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatc 107  Q
    ||||||||| ||||| ||| |||||||| ||||||| ||| ||||||||||||| | ||||||||||||||||||| || ||||||||||||     |||    
T  5937875 aatgacaaaaatttgaatggtctctttggtgtgtttgtttgtatttttgacagcatactgaagatcttcatcacgccgtcaaatagagagct-----atc 5937781  T
Q  108 tatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    |||||| |||  ||||||||||||| ||| |||||||| ||||||||  |||| | |||||| |||||| |||||||||| |||||    
T  5937780 tatttgcgacaacgtgagaaagatcatcaacttaatgataaaaatttgcatgg-tctctttgatgtgttcgtgtgttttgttggta 5937696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 21484683 - 21484504
Alignment:
Q  5 cacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactc 104  Q
    |||||||||||| | ||| ||| | |||||| ||||||| ||| ||||||| ||||| || |||||||||||||||||| || ||| | ||||||         
T  21484683 cacaatgacaaaaaattgtatggtttctttggtgtgtttgtttgtattttttacagcatgttgaagatcttcatcacgcggtcaaacaaagagct----- 21484589  T
Q  105 atctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctg 190  Q
    ||||||||| |||| ||||||||| ||||||| ||||||||| |||||||  |||||||||| |||||||||||||||||||||||    
T  21484588 atctatttgcgaccacgtgagaaaaatcctcaacttaatgac-aaaatttgcatggttttctgtggtgtgtttgtgtgttttgctg 21484504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 45526779 - 45526860
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacg 82  Q
    |||||||||||||||| ||||||||| |||||||| ||||||| ||| ||||||||||||| ||||||||||||||||||||    
T  45526779 tcagcacaatgacaaaaatttgcatggtctctttggtgtgtttgtttgtatttttgacagcatgctgaagatcttcatcacg 45526860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 51 - 183
Target Start/End: Complemental strand, 37127381 - 37127255
Alignment:
Q  51 tttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaa 150  Q
    ||||||||| | |||||||||||||||||| ||||| |||||||||||||     |||||||| |||||||||||||||||||||| |  |||| |||||    
T  37127381 tttttgacatcatgctgaagatcttcatcatgcagtcaaatagagagcta-----tctatttgcgaccgcgtgagaaagatcctcaacacaatggcaaaa 37127287  T
Q  151 atttatatggttttctttggtgtgtttgtgtgt 183  Q
    ||||| |||| ||||||| |||||| |||||||    
T  37127286 atttacatgg-tttctttagtgtgtgtgtgtgt 37127255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 45536321 - 45536394
Alignment:
Q  120 cgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    ||||| ||||||| |||||||||||||||||||||  |||||||||||| | ||||||||||||||||||||||    
T  45536321 cgtgataaagatcttcagcttaatgacaaaaatttgcatggttttctttagcgtgtttgtgtgttttgctggta 45536394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 5937911 - 5937838
Alignment:
Q  105 atctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgt 179  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||  |||| | ||||||||||||||||    
T  5937911 atctatttgcgaccgcgtgagaaagatcctccgcttaatgacaaaaatttgaatgg-tctctttggtgtgtttgt 5937838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 24169087 - 24169154
Alignment:
Q  126 aaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    |||||||||||||  ||||||||||| ||  |||||||||| |||||||||||||| |||||||||||    
T  24169087 aaagatcctcagcacaatgacaaaaaatttcatggttttctatggtgtgtttgtgtattttgctggta 24169154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 18964105 - 18964166
Alignment:
Q  124 agaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgtttt 186  Q
    ||||||||| |||||  ||||||||||||||  ||||||| ||||||||||||||||||||||    
T  18964105 agaaagatcttcagcacaatgacaaaaatttgcatggttt-ctttggtgtgtttgtgtgtttt 18964166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 34949077 - 34949150
Alignment:
Q  105 atctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgt 179  Q
    ||||||||| || || |||||||||||| || ||||||||| ||||||||  |||| | ||||||||||||||||    
T  34949077 atctatttgcgatcgggtgagaaagatcatctgcttaatgaaaaaaatttgcatgg-tctctttggtgtgtttgt 34949150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 55611886 - 55611694
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||||||||||||||| ||||||||| |||||||| |||| || ||| ||||||||||||| || ||| ||||||||||| ||||| |||||||||| ||    
T  55611886 tcagcacaatgacaaaaatttgcatggtctctttggtgtgcttgtttgtatttttgacagcatgttgaggatcttcatcatgcagtcaaatagagagtta 55611787  T
Q  101 actcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||    
T  55611786 actcatctatttgcgaccgcatgagaaagatcatcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggta 55611694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 3 - 193
Target Start/End: Complemental strand, 47985182 - 47984991
Alignment:
Q  3 agcacaatgacaaagatttgca-tgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaa 101  Q
    |||||||||||||| |||||   || |||||||| |||| || ||| ||||||||||||| |||||| ||||||||||| ||||| ||||||||||||||    
T  47985182 agcacaatgacaaaaatttggtctggtctctttggtgtggttgtttgtatttttgacagcatgctgaggatcttcatcaagcagtcaaatagagagctaa 47985083  T
Q  102 ctcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    ||||| |||||| |||||| ||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||| |||||    
T  47985082 ctcatttatttgcgaccgcatgagaaagatcctcaacttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggta 47984991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 53270018 - 53270210
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||| ||||||||| | |||| |||| |||||||| ||||||| ||| ||||||||||||| ||  ||||||||||||||||| || |||||||||| ||    
T  53270018 tcagtacaatgacataaatttacatggtctctttggtgtgtttgtttgtatttttgacagcatgtagaagatcttcatcacgccgtcaaatagagagtta 53270117  T
Q  101 actcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    ||||||||||||  |||  |||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||    
T  53270118 actcatctatttacgacaacgtgaggaagatcctcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttggtggta 53270210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 40761857 - 40761671
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||||||||||||||| ||||||||| |||||||| |||| || ||| ||||||||||||| |||||| ||||||||||| ||| | |||||||||| ||    
T  40761857 tcagcacaatgacaaaaatttgcatggtctctttggtgtgcttgtttgtatttttgacagcatgctgaggatcttcatcatgcaatcaaatagagagtta 40761758  T
Q  101 actcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttg 187  Q
    ||||||||||||| ||||||  ||||||||||||||||||||||||||||| ||  ||||| ||||||| ||| |||||||||||||    
T  40761757 actcatctatttgcgaccgcaagagaaagatcctcagcttaatgacaaaaaattgcatggtattctttgttgtatttgtgtgttttg 40761671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 53512161 - 53512354
Alignment:
Q  1 tcagcacaatgacaaagatttg--catgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagc 98  Q
    |||||||||||||||| |||||  | || |||||||| |||| || ||| ||||||||||||| || ||| ||||||||||| ||| | |||||||||||    
T  53512161 tcagcacaatgacaaaaatttggtcttg-tctctttggtgtggttgtttgtatttttgacagcatgttgaggatcttcatcatgcaatcaaatagagagc 53512259  T
Q  99 taactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    |||||| |||||||| |||||| ||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||    
T  53512260 taactcgtctatttgcgaccgcatgagaaagatccttagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggta 53512354  T

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Target: chr4; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 3 - 193
Target Start/End: Complemental strand, 45659024 - 45658834
Alignment:
Q  3 agcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaac 102  Q
    ||||| |||||| | ||||||||| ||| |||| ||||||| ||| ||||||||||||| ||| |||||| ||||||| || || |||||||||||||||    
T  45659024 agcacgatgacataaatttgcatggtctatttggtgtgtttgtttgtatttttgacagcatgcagaagatgttcatcatgccgtcaaatagagagctaac 45658925  T
Q  103 tcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    ||||||||||  |||  | |||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||    
T  45658924 tcatctatttacgacaacatgaggaagatcctcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggta 45658834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 40692479 - 40692286
Alignment:
Q  1 tcagcacaatgacaaagatttgca-tgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagct 99  Q
    |||||||||||||||| |||||   || |||||||| |||| || ||| |||||||||| || || ||| ||||||||||| ||||| ||||||||| ||    
T  40692479 tcagcacaatgacaaaaatttggtctggtctctttggtgtggttgtttgtatttttgaccgcatgttgaggatcttcatcatgcagtcaaatagagaact 40692380  T
Q  100 aactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    |||| ||||||||| |||| | ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  40692379 aactaatctatttgcgaccacatgagaaagatcctcaacttaatgacaaaaatttaaatggttttctttggtgtgtttgtgtgttttgatggta 40692286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 177
Target Start/End: Original strand, 47604404 - 47604579
Alignment:
Q  3 agcacaatgacaaagatttgca-tgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaa 101  Q
    |||||||||||||| |||||   || |||||||| |||| || ||| ||||||||||| | |||||| ||||||||||| ||||| ||||||||||||||    
T  47604404 agcacaatgacaaaaatttggtctggtctctttggtgtggttgtttgtatttttgacaacatgctgaggatcttcatcatgcagtcaaatagagagctaa 47604503  T
Q  102 ctcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgttt 177  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||  ||||||||||||| |||||||    
T  47604504 ctcatctatttgcgaccgcatgagaaagatcctcagcttaatgacaaaaatttgcatggttttctttgatgtgttt 47604579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 5 - 192
Target Start/End: Complemental strand, 52918949 - 52918762
Alignment:
Q  5 cacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactc 104  Q
    ||||||||||||  |||||||| |||||||| |||| || ||| ||||||||||||| ||| |||||||||||| |||| || ||| |||||||||||||    
T  52918949 cacaatgacaaaattttgcatggtctctttggtgtgcttgtttgtatttttgacagcatgcagaagatcttcataacgccgtcaaacagagagctaactc 52918850  T
Q  105 atctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggt 192  Q
    ||||||||| |||  |||||| || |||||||||||||||||||||||||  ||||| ||||||| ||||||||||||||||| ||||    
T  52918849 atctatttgcgacaacgtgaggaatatcctcagcttaatgacaaaaatttgcatggtattctttgttgtgtttgtgtgttttgatggt 52918762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 185
Target Start/End: Complemental strand, 38990160 - 38989980
Alignment:
Q  5 cacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactc 104  Q
    |||||||||||| ||||||||| |||||||| |||| || ||| ||||||||||||| ||| |||||||||||| |||| || ||| |||||||||||||    
T  38990160 cacaatgacaaaaatttgcatggtctctttggtgtgcttgtttgtatttttgacagcatgcagaagatcttcataacgccgtcaaaaagagagctaactc 38990061  T
Q  105 atctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttt 185  Q
    || |||||  |||  |||||| || || ||||||||||||||||||||||  ||||| ||||||| |||||||||||||||    
T  38990060 atatatttacgacaacgtgaggaaaatactcagcttaatgacaaaaatttgcatggtattctttgttgtgtttgtgtgttt 38989980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 11648344 - 11648520
Alignment:
Q  12 acaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatt 111  Q
    ||||| ||||||||| |||||||| ||||||| ||| ||||||||| ||| || || ||||||||||||||| || |||||||||||||     | ||||    
T  11648344 acaaaaatttgcatggtctctttggtgtgtttgtttgtatttttgatagcatgatgtagatcttcatcacgccgtcaaatagagagcta-----tatatt 11648438  T
Q  112 tgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    || |||  | ||||||| |||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||    
T  11648439 tgcgacaacatgagaaaaatcctcagcttaatgacaaaaaattgcatggttttctttggtgtgtttgtgtgttttgctggta 11648520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 34953202 - 34953105
Alignment:
Q  49 tatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaa 148  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||||||||     |  |||||||| |||||| | ||||||||| |||||  ||||||||    
T  34953202 tatttttgacagcatgctgaagatcttcatcatgcagtcaaatagagag-----ttgtctatttgcgaccgcataagaaagatcttcagcacaatgacaa 34953108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 193
Target Start/End: Original strand, 49604884 - 49605019
Alignment:
Q  49 tatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaa 148  Q
    ||||||||||| | || |||| |||||||||| ||| ||| |||||||||||     | |||||| |||| | ||| ||||||| | ||| |||||||||    
T  49604884 tatttttgacaacatgttgaacatcttcatcatgcacttagatagagagcta-----tttatttgcgacctcatgaaaaagatctttagcataatgacaa 49604978  T
Q  149 aaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    ||||||  ||||||||    ||||||| |||||||||||||||||    
T  49604979 aaatttccatggtttt----ggtgtgtgtgtgtgttttgctggta 49605019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 44108725 - 44108787
Alignment:
Q  9 atgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaaga 71  Q
    |||||||| |||||||||||||||||| |||| || ||| ||||||||||||| ||| |||||    
T  44108725 atgacaaaaatttgcatgatctctttggtgtgcttgtttgtatttttgacagcatgcagaaga 44108787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 45659106 - 45659059
Alignment:
Q  49 tatttttgacagcgtgctgaagatcttcatcacgcagttaaatagaga 96  Q
    ||||||||||||| |||||||||||||||||| || |||| |||||||    
T  45659106 tatttttgacagcatgctgaagatcttcatcatgctgttatatagaga 45659059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 40603158 - 40603202
Alignment:
Q  52 ttttgacagcgtgctgaagatcttcatcacgcagttaaatagaga 96  Q
    |||||||||| |||||||||| |||||||  ||||||||||||||    
T  40603158 ttttgacagcatgctgaagattttcatcatacagttaaatagaga 40603202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 16483490 - 16483682
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||||||||||||||| ||||||||| |||||||| |||| || ||| ||||||||||||| || ||| ||||||||||| ||||| |||||||||| ||    
T  16483490 tcagcacaatgacaaaaatttgcatggtctctttggtgtgcttgtttgtatttttgacagcatgttgaggatcttcatcatgcagtcaaatagagagtta 16483589  T
Q  101 actcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||    
T  16483590 actcatctatttgcgaccgcatgagaaagatcatcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggta 16483682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 9127664 - 9127840
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||||||||||||||| ||||||||| |||||||| ||||||| ||| ||||||||||||| |||||||||||||||||| || || |||||||||||||    
T  9127664 tcagcacaatgacaaaaatttgcatggtctctttggtgtgtttgtttgtatttttgacagcatgctgaagatcttcatcatgccgtcaaatagagagcta 9127763  T
Q  101 actcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgttt 177  Q
    | ||||||||||| ||| || ||||||||||||||| |||||||||||||||||  |||||||||||||||||||||    
T  9127764 attcatctatttgcgacggcatgagaaagatcctcaacttaatgacaaaaatttgcatggttttctttggtgtgttt 9127840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 9135771 - 9135947
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||||||||||||||| ||||||||| |||||||| ||||||| ||| ||||||||||||| |||||||||||||||||| || || |||||||||||||    
T  9135771 tcagcacaatgacaaaaatttgcatggtctctttggtgtgtttgtttgtatttttgacagcatgctgaagatcttcatcatgccgtcaaatagagagcta 9135870  T
Q  101 actcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgttt 177  Q
    | ||||||||||| ||| || ||||||||||||||| |||||||||||||||||  |||||||||||||||||||||    
T  9135871 attcatctatttgcgacggcatgagaaagatcctcaacttaatgacaaaaatttgcatggttttctttggtgtgttt 9135947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 21979383 - 21979196
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||||||||||||||| | || |||| |||||||  ||||||| || |||||||||||||| |||||||||||||||||||||| | ||||||||| ||     
T  21979383 tcagcacaatgacaaaaaatttcatggtctcttttgtgtgtttgttcttatttttgacagcatgctgaagatcttcatcacgcaatcaaatagagaact- 21979285  T
Q  101 actcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
        |||||||||  |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  21979284 ----atctatttgcaaccgcgtgagaaagatcctcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgctggta 21979196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 22001814 - 22001627
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||||||||||||||| | || |||| |||||||  ||||||| || |||||||||||||| |||||||||||||||||||||| | ||||||||| ||     
T  22001814 tcagcacaatgacaaaaaatttcatggtctcttttgtgtgtttgttcttatttttgacagcatgctgaagatcttcatcacgcaatcaaatagagaact- 22001716  T
Q  101 actcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
        |||||||||  |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  22001715 ----atctatttgcaaccgcgtgagaaagatcctcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgctggta 22001627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 47374267 - 47374075
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||||||||| | ||| ||||||||| |||||||| |||| || ||| |||||||| |||| |||||| ||||||||||| ||||| ||||| |||| ||    
T  47374267 tcagcacaataataaaaatttgcatggtctctttggtgtgcttgtttgtatttttggcagcatgctgaggatcttcatcatgcagtcaaataaagagata 47374168  T
Q  101 actcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    ||||||||||||| |||| | |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||    
T  47374167 actcatctatttgcgaccacatgagaaagatcctcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggta 47374075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 30389551 - 30389744
Alignment:
Q  1 tcagcacaatgacaaagatttgca-tgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagct 99  Q
    |||||||||||||||| |||||   || |||||||| |||| || ||| ||||||||||||| || ||| ||||||||||| ||||| ||||||||||||    
T  30389551 tcagcacaatgacaaaaatttggtctggtctctttggtgtggttgtttgtatttttgacagcatgttgaggatcttcatcatgcagtcaaatagagagct 30389650  T
Q  100 aactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    |||||||||||||| ||| |  |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||    
T  30389651 aactcatctatttgcgactgtatgagaaagatcctcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggta 30389744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 56 - 193
Target Start/End: Complemental strand, 44207202 - 44207065
Alignment:
Q  56 gacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaattta 155  Q
    |||||| |||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||     
T  44207202 gacagcatgctgaggatcttcatcatgcagtcaaatagagagctaactcatctatttgcgaccgcatgagaaagatcctcagcttaatgacaaaaatttg 44207103  T
Q  156 tatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
     |||||||||||||||||||||||||||| || |||||    
T  44207102 catggttttctttggtgtgtttgtgtgttgtgatggta 44207065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 48062819 - 48063004
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||||| ||||||||| ||||| ||| |||||||| |||| || ||| ||||||||||||| ||| ||||||||||||||||| || |||||||||||||    
T  48062819 tcagcataatgacaaaaatttgaatggtctctttggtgtgcttgtttgtatttttgacagcatgcagaagatcttcatcacgccgtcaaatagagagcta 48062918  T
Q  101 actcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgtttt 186  Q
    |||||| |||||| |||  | |||| |||||||||| |||||||||||||||||  ||||||||||||| ||||||||||||||||    
T  48062919 actcatatatttgcgacaacatgaggaagatcctcaacttaatgacaaaaatttgcatggttttctttgttgtgtttgtgtgtttt 48063004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 49326814 - 49326625
Alignment:
Q  3 agcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaac 102  Q
    |||||||||||||| ||||||||| |||||||| | || || ||| ||| ||||||||| ||  ||||||||||||||||| || |||||||||||||||    
T  49326814 agcacaatgacaaaaatttgcatggtctctttggtatgattgtttgtatctttgacagcatggagaagatcttcatcacgccgtcaaatagagagctaac 49326715  T
Q  103 tcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggt 192  Q
    |||| |||||| |||  |||| | ||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||| ||||    
T  49326714 tcatatatttgcgacaacgtggggaagatcctcagcttaatgacaaaaatttgcatggttttctttgttgtgtttgtgtgttttgatggt 49326625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 18876765 - 18876952
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||||||||||||||| || | |||| |||||||  ||||||| ||  ||||||||||||| |||||||||||||||||||||||| ||||||||| | |    
T  18876765 tcagcacaatgacaaaaatgttcatggtctcttttgtgtgtttgttcgtatttttgacagcatgctgaagatcttcatcacgcagtcaaatagagaacaa 18876864  T
Q  101 actcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
         |||||||  ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||| |||||||||||    
T  18876865 -----tctatttacgaccgcgtgagaaagatcctcagcttaatgacaaaaatttgcatggttttctttggtatgtttgtgtattttgctggta 18876952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 192
Target Start/End: Complemental strand, 41974066 - 41973880
Alignment:
Q  4 gcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaact 103  Q
    ||||||||||||| ||||||||| |||||||| |||| || ||| ||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||    
T  41974066 gcacaatgacaaaaatttgcatggtctctttggtgtgcttgtttgtatttttgacagcatgcagaagatcttcatcacgctgtcaaatagagagctaact 41973967  T
Q  104 catctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggt 192  Q
    ||  |||||| |||  |||||| ||||||||||||||||||| ||||||||  ||| | ||||||| ||||||||||||||||| ||||    
T  41973966 ca--tatttgcgacaacgtgaggaagatcctcagcttaatgataaaaatttgcatgttattctttgttgtgtttgtgtgttttgatggt 41973880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 8485929 - 8485738
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||| ||||||||||| ||||||||| |||||||| |||  || ||| ||||||||||||| ||| |||||||||||||| ||  | |||||||||||||    
T  8485929 tcagtacaatgacaaaaatttgcatggtctctttggtgtacttttttgtatttttgacagcatgcagaagatcttcatcatgccatcaaatagagagcta 8485830  T
Q  101 actcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggt 192  Q
    ||||||||||||| |||  |||||| |||||||| ||||||||||||||||| |  ||||||||||||| | ||||||||||||||| ||||    
T  8485829 actcatctatttgcgacaacgtgaggaagatccttagcttaatgacaaaaatgtgcatggttttctttgttttgtttgtgtgttttgatggt 8485738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 5 - 191
Target Start/End: Complemental strand, 51328382 - 51328202
Alignment:
Q  5 cacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactc 104  Q
    |||||||||||| | || |||| | |||||| ||||||| ||| ||||||||||||| ||||||||||||||||||||| ||| ||||||||| ||        
T  51328382 cacaatgacaaaaaatt-catggtttctttggtgtgtttgtttgtatttttgacagcatgctgaagatcttcatcacgcggttcaatagagagtta---- 51328288  T
Q  105 atctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctgg 191  Q
     |||||||| |||| ||||||||||||||||| |||||||||||||||||   ||||||||||||| ||||||||||||||||||||    
T  51328287 -tctatttgcgaccacgtgagaaagatcctcaacttaatgacaaaaatttgcttggttttctttggcgtgtttgtgtgttttgctgg 51328202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 10494089 - 10493959
Alignment:
Q  52 ttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaa 151  Q
    |||||||||| |||| ||||||||||||||| ||| |||||||||| ||     |||||||| ||||| |||||||||||| ||||||||||||||||||    
T  10494089 ttttgacagcttgctcaagatcttcatcacgtagtcaaatagagagtta-----tctatttgcgaccgtgtgagaaagatcatcagcttaatgacaaaaa 10493995  T
Q  152 tttatatggttttctttggtgtgtttgtgtgttttg 187  Q
    |||  ||||||||||||  |||||||||||||||||    
T  10493994 tttgcatggttttcttttttgtgtttgtgtgttttg 10493959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 179
Target Start/End: Original strand, 48062739 - 48062863
Alignment:
Q  49 tatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaa 148  Q
    ||||||||||||| |||||| ||||||||||| || |||| ||||||| |||     | |||||   ||  | ||||||||||||||||| |||||||||    
T  48062739 tatttttgacagcatgctgatgatcttcatcatgctgttatatagagaacta-----tatatttaaaacaacatgagaaagatcctcagcataatgacaa 48062833  T
Q  149 aaatttatatggttttctttggtgtgtttgt 179  Q
    ||||||  |||| | ||||||||||| ||||    
T  48062834 aaatttgaatgg-tctctttggtgtgcttgt 48062863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 9127652 - 9127708
Alignment:
Q  122 tgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgt 179  Q
    |||||||||||||||||  ||||||||||||||  |||| | ||||||||||||||||    
T  9127652 tgagaaagatcctcagcacaatgacaaaaatttgcatgg-tctctttggtgtgtttgt 9127708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 9135759 - 9135815
Alignment:
Q  122 tgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgt 179  Q
    |||||||||||||||||  ||||||||||||||  |||| | ||||||||||||||||    
T  9135759 tgagaaagatcctcagcacaatgacaaaaatttgcatgg-tctctttggtgtgtttgt 9135815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 23334321 - 23334273
Alignment:
Q  49 tatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagag 97  Q
    ||||||||||| | |||||||||||||||||||||  | ||||||||||    
T  23334321 tatttttgacaacatgctgaagatcttcatcacgctatcaaatagagag 23334273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 53394578 - 53394637
Alignment:
Q  126 aaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgtttt 186  Q
    ||||||| |||||  ||||||||||| ||  ||||||| ||||||||||||||||||||||    
T  53394578 aaagatcttcagcacaatgacaaaaaatttcatggttt-ctttggtgtgtttgtgtgtttt 53394637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 5 - 193
Target Start/End: Complemental strand, 3474762 - 3474574
Alignment:
Q  5 cacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactc 104  Q
    |||||||||||| ||||||||| |||||||| |||| || ||| ||||||||||||| |||||| |||||| |||| ||||| |||||||||| ||||||    
T  3474762 cacaatgacaaaaatttgcatggtctctttggtgtgcttgtttgtatttttgacagcatgctgatgatctttatcatgcagtcaaatagagagataactc 3474663  T
Q  105 atctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||    
T  3474662 atctatttgcgaccgcatgagaaagatcctcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggta 3474574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 7564055 - 7563865
Alignment:
Q  8 aatgacaaagatttgcatgatctctttgatgtgtttatttttatttt-----tgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaac 102  Q
    ||||||||| ||||||||| |||||||| ||||||| ||| ||||||     ||||||| |||||||||||||||||||||||| |||||||||||||||    
T  7564055 aatgacaaaaatttgcatggtctctttggtgtgtttgtttgtattttaattttgacagcatgctgaagatcttcatcacgcagtcaaatagagagctaac 7563956  T
Q  103 tcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||| |||||  |||||||||||||| ||||||||||||||| ||||||    
T  7563955 tcatctatttgcgaccgtgtgagaaagatcctcagcttaatgacaagaatttgcatggttttctttggggtgtttgtgtgtttttctggta 7563865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 49 - 193
Target Start/End: Original strand, 14271011 - 14271155
Alignment:
Q  49 tatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaa 148  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  14271011 tatttttgacagcatgctgaggatcttcatcatgcagttaaatagagagctaactcatctatttgcgactgcgtgagaaagatcctcagcttaatgacaa 14271110  T
Q  149 aaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    ||||||  |||||||||||| |||||||||||||||||| |||||    
T  14271111 aaatttgcatggttttcttttgtgtgtttgtgtgttttgatggta 14271155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 5749410 - 5749225
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||||||||||||||| ||||||||| |||||||| |||| || ||| ||||||||||||| ||| ||||||||||||||||| || |||||||||||||    
T  5749410 tcagcacaatgacaaaaatttgcatggtctctttggtgtgcttgtttgtatttttgacagcatgcagaagatcttcatcacgccgtcaaatagagagcta 5749311  T
Q  101 actcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgtttt 186  Q
    |||||| |||||| | |  |||||| ||||||||||||||||||||||||||||  ||||||||||||| ||| ||||||||||||    
T  5749310 actcatatatttgcggcaacgtgaggaagatcctcagcttaatgacaaaaatttgcatggttttctttgttgtatttgtgtgtttt 5749225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 28 - 193
Target Start/End: Original strand, 39598872 - 39599037
Alignment:
Q  28 tctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatttgtgaccgcgtgagaa 127  Q
    |||||||| |||| || ||| ||||||||||| | |||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||| ||||||    
T  39598872 tctctttggtgtggttgtttgtatttttgacaacatgctgaggatcttcatcatgcagtcaaatagagagctaactcatctatttgcgaccgcatgagaa 39598971  T
Q  128 agatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    ||||||| |||||||||||||||| ||  ||||||||||||||||||||||||||||||| |||||    
T  39598972 agatcctgagcttaatgacaaaaaattgcatggttttctttggtgtgtttgtgtgttttgatggta 39599037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 12524409 - 12524220
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||||||||||||||| ||||||||| ||||| || |||| || ||| |||||  |||||| ||| ||||||||||||||||| || |||||||||| ||    
T  12524409 tcagcacaatgacaaaaatttgcatggtctctatggtgtgcttgtttgtattt--gacagcatgcagaagatcttcatcacgccgtcaaatagagagtta 12524312  T
Q  101 actcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggt 192  Q
    |||||| ||||||||||  |||||| ||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||| ||||    
T  12524311 actcatatatttgtgacaacgtgaggaagatcctcagcttaatgacaaaaatttgcatggttttctttgttgtgtttgtgtgttttgatggt 12524220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 192
Target Start/End: Complemental strand, 10222714 - 10222528
Alignment:
Q  5 cacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactc 104  Q
    |||||||||||| ||||||||| |||||||| |||| || ||| ||||||||||||| ||| ||||||||| ||||||| || ||| |||||| ||| ||    
T  10222714 cacaatgacaaaaatttgcatggtctctttggtgtgcttgtttgtatttttgacagcatgcagaagatctt-atcacgctgtcaaacagagagttaattc 10222616  T
Q  105 atctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggt 192  Q
    ||||||||| |||  | |||| |||||| |||||||||||||||||||||  ||| | ||||||| ||||||||||||||||| ||||    
T  10222615 atctatttgcgacaacatgaggaagatcatcagcttaatgacaaaaatttgcatgatattctttgttgtgtttgtgtgttttgatggt 10222528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 10312686 - 10312574
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||||||||||||||| ||||||||| |||||||| |||| || ||| ||||||||||||| ||| ||||||||||||||||| || |||||||||||||    
T  10312686 tcagcacaatgacaaacatttgcatggtctctttggtgtgcttgtttgtatttttgacagcatgcagaagatcttcatcacgccgtcaaatagagagcta 10312587  T
Q  101 actcatctatttg 113  Q
    |||||| ||||||    
T  10312586 actcatatatttg 10312574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 4851959 - 4852071
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||||||||||||||| |||| |||| |||||||| |||| || ||| ||||||||||||| | | ||||||||||||||||| || |||||||||||||    
T  4851959 tcagcacaatgacaaaaatttacatggtctctttggtgtgcttgtttgtatttttgacagcatacagaagatcttcatcacgccgtcaaatagagagcta 4852058  T
Q  101 actcatctatttg 113  Q
    |||||||||||||    
T  4852059 actcatctatttg 4852071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 30517781 - 30517698
Alignment:
Q  106 tctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgct 189  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||    
T  30517781 tctatttgcgaccgcgtgaaaaagatcctcagcttaatgacaaaaatttgcatgattttctttggtgtgtttgtgtgttttgct 30517698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 10311972 - 10311907
Alignment:
Q  127 aagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggt 192  Q
    ||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||| ||||    
T  10311972 aagatcctcagcttaatgacaaaaatttgcatggttttctttgttgtgtttgtgtgttttgatggt 10311907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 18277275 - 18277340
Alignment:
Q  127 aagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggt 192  Q
    ||||||||| ||||||||||||||||||  ||||||||||||| ||||||||||||||||| ||||    
T  18277275 aagatcctcggcttaatgacaaaaatttgcatggttttctttgttgtgtttgtgtgttttgatggt 18277340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 4852094 - 4852154
Alignment:
Q  120 cgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtg 180  Q
    |||||| ||||||||||||||||||||||||||||  ||| ||||||||| ||||||||||    
T  4852094 cgtgaggaagatcctcagcttaatgacaaaaatttgcatgcttttctttgttgtgtttgtg 4852154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 7564091 - 7564018
Alignment:
Q  105 atctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgt 179  Q
    ||||||||| ||| |||||||||||||| || ||||||||||||||||||  |||| | ||||||||||||||||    
T  7564091 atctatttgcgacagcgtgagaaagatcatccgcttaatgacaaaaatttgcatgg-tctctttggtgtgtttgt 7564018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 21535143 - 21535076
Alignment:
Q  106 tctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgt 173  Q
    ||||||||||||| |  ||| ||||| || |||||||||| |||||||| ||||||||||||||||||    
T  21535143 tctatttgtgaccacaagaggaagatgcttagcttaatgataaaaatttgtatggttttctttggtgt 21535076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 6605128 - 6605058
Alignment:
Q  122 tgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    ||||||||||||||| |  || |||||||||||  ||||||| ||||| | |||||||||||||||||||||    
T  6605128 tgagaaagatcctcaacacaacgacaaaaatttgcatggttt-ctttgatttgtttgtgtgttttgctggta 6605058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 4851947 - 4852003
Alignment:
Q  122 tgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgt 179  Q
    |||||||||||||||||  ||||||||||||||| |||| | ||||||||||| ||||    
T  4851947 tgagaaagatcctcagcacaatgacaaaaatttacatgg-tctctttggtgtgcttgt 4852003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 7254892 - 7254702
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||||||||||||||| ||||||||| |||||||| |||| || ||| ||||||||||||| || ||| ||||||||||| ||||| |||||| ||||||    
T  7254892 tcagcacaatgacaaaaatttgcatgctctctttggtgtgcttgtttgtatttttgacagcatgttgaggatcttcatcatgcagtcaaatagggagcta 7254793  T
Q  101 actcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggt 192  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  7254792 actcatctatttgtgaccgc-tgagaaagatcctcaacttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggt 7254702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 38256970 - 38256778
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttt-tatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagct 99  Q
    |||||||||||||||| ||||||||| |||||||| |||| || |||| ||||||||||||| |||||| ||||||||||| ||||| ||||||||||||    
T  38256970 tcagcacaatgacaaaaatttgcatggtctctttggtgtgcttgttttgtatttttgacagcatgctgaggatcttcatcatgcagtcaaatagagagct 38256871  T
Q  100 aactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggt 192  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||  ||||||  ||||| ||||||| ||||||||||||||||| ||||    
T  38256870 aactcatctatttgcgaccgcatgagaaagatcctcagcttaatgacttaaatttgcatggtattctttgttgtgtttgtgtgttttgatggt 38256778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 38264545 - 38264353
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttt-tatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagct 99  Q
    |||||||||||||||| ||||||||| |||||||| |||| || |||| ||||||||||||| |||||| ||||||||||| ||||| ||||||||||||    
T  38264545 tcagcacaatgacaaaaatttgcatggtctctttggtgtgcttgttttgtatttttgacagcatgctgaggatcttcatcatgcagtcaaatagagagct 38264446  T
Q  100 aactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggt 192  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||  ||||||  ||||| ||||||| ||||||||||||||||| ||||    
T  38264445 aactcatctatttgcgaccgcatgagaaagatcctcagcttaatgacttaaatttgcatggtattctttgttgtgtttgtgtgttttgatggt 38264353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 26792626 - 26792819
Alignment:
Q  1 tcagcacaatgacaaagatttgca-tgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagct 99  Q
    |||||||||||||||| |||||   || |||||||| |||| || ||| ||||||||||||| |||||| ||||||||||| ||||| ||||||||||||    
T  26792626 tcagcacaatgacaaaaatttggtctggtctctttggtgtgcttgtttgtatttttgacagcatgctgaggatcttcatcatgcagtcaaatagagagct 26792725  T
Q  100 aactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    |||| ||||||||| |||||  |||||||||||| || |||||||||||||||||  ||||||||||||||||||||||||||||||| |||||    
T  26792726 aacttatctatttgcgaccgaatgagaaagatccacaacttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggta 26792819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 109323 - 109514
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||||||||||||||| ||||| ||| |||||||| | ||||| ||| ||||||||||| | ||| ||| ||||||||||||| || ||| |||||||||    
T  109323 tcagcacaatgacaaaaatttgtatggtctctttggtttgtttgtttgtatttttgacaacatgcagaaaatcttcatcacgccgtcaaacagagagcta 109422  T
Q  101 actcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggt 192  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||||||||||  ||| ||||||||| |||||| |||||||||| ||||    
T  109423 actcatctatttgtgacaacgtgaggaagatcctcagcttaatgacaaaaatttgcatgattttctttgttgtgttcgtgtgttttgatggt 109514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 192
Target Start/End: Complemental strand, 35584559 - 35584372
Alignment:
Q  5 cacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactc 104  Q
    ||||||||||||  |||||||| |||||||| |||| |  ||| ||||||||||||| |||||| ||||||||||| ||||| |||||||||||||||||    
T  35584559 cacaatgacaaaagtttgcatggtctctttggtgtgctcgtttgtatttttgacagcatgctgaggatcttcatcatgcagtcaaatagagagctaactc 35584460  T
Q  105 atctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggt 192  Q
    ||||||||| |||||| ||||||||||| ||| |||||||||||||||||  ||| | ||||||| ||||||||||||||||| ||||    
T  35584459 atctatttgcgaccgcatgagaaagatcttcatcttaatgacaaaaatttgcatgatattctttgttgtgtttgtgtgttttgatggt 35584372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 43748703 - 43748512
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||||||||||||||| ||||||||| ||| |||| |||| || ||| ||||||||||||| ||| | ||||||||||||||| |  ||| |||||||||    
T  43748703 tcagcacaatgacaaaaatttgcatggtctatttggtgtgcttgtttgtatttttgacagcatgcagtagatcttcatcacgccgccaaacagagagcta 43748604  T
Q  101 actcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggt 192  Q
    ||||||||||||| |||  |||||| ||||||||||||||||||||||||||||  ||||| ||||||| ||||||||||||||||| ||||    
T  43748603 actcatctatttgcgacaacgtgaggaagatcctcagcttaatgacaaaaatttgcatggtattctttgttgtgtttgtgtgttttgatggt 43748512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 33849410 - 33849594
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||||||||||||||| ||||||||| |||||||| |||| || ||| ||||||||||||| ||| |||||||||||||||||  | ||| | |||||||    
T  33849410 tcagcacaatgacaaaaatttgcatg-tctctttggtgtgcttgtttgtatttttgacagcatgcagaagatcttcatcacgccatcaaacaaagagcta 33849508  T
Q  101 actcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgtttt 186  Q
    ||||||||||||| |||  |||||| ||||||||||||||||||||||||||||  ||||| ||||||  ||||||||||||||||    
T  33849509 actcatctatttgcgacaacgtgaggaagatcctcagcttaatgacaaaaatttgcatggtattcttttttgtgtttgtgtgtttt 33849594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 49 - 186
Target Start/End: Original strand, 45490773 - 45490910
Alignment:
Q  49 tatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaa 148  Q
    ||||||||||||| |||||| ||||||||||| ||||| |||||||||||||| ||||||||||| ||| || |||||||||||||||||||||||||||    
T  45490773 tatttttgacagcatgctgaggatcttcatcatgcagtcaaatagagagctaaatcatctatttgcgactgcatgagaaagatcctcagcttaatgacaa 45490872  T
Q  149 aaatttatatggttttctttggtgtgtttgtgtgtttt 186  Q
    ||||||  ||| ||||||||||||||||||||||||||    
T  45490873 aaatttgcatgattttctttggtgtgtttgtgtgtttt 45490910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 192
Target Start/End: Original strand, 37999351 - 37999494
Alignment:
Q  49 tatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaa 148  Q
    |||| |||||||| |||  |||||||||||||||| || ||||||||| |||||||||||||||| |||  |||||| ||||||||| ||||||||||||    
T  37999351 tattgttgacagcatgcataagatcttcatcacgccgtcaaatagagaactaactcatctatttgcgacaacgtgaggaagatcctcggcttaatgacaa 37999450  T
Q  149 aaatttatatggttttctttggtgtgtttgtgtgttttgctggt 192  Q
    ||||||  ||| ||||||||||||||||||||||||||| ||||    
T  37999451 aaatttgcatgattttctttggtgtgtttgtgtgttttgatggt 37999494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 30 - 185
Target Start/End: Original strand, 1378109 - 1378259
Alignment:
Q  30 tctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatttgtgaccgcgtgagaaag 129  Q
    |||||| |||||||  || || |||||||||| |||||||||||||||||||||||| |||||||||||||     ||||||||||| || | |||||||    
T  1378109 tctttggtgtgtttggttgtaattttgacagcatgctgaagatcttcatcacgcagtcaaatagagagcta-----tctatttgtgatcgtgagagaaag 1378203  T
Q  130 atcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttt 185  Q
    ||| |  | ||||||||||||||||  |||||||||||||||||||||||||||||    
T  1378204 atcatatgtttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttt 1378259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 24686991 - 24686869
Alignment:
Q  3 agcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaac 102  Q
    |||||||||||||| |||||||||||||||||| ||||||| ||| ||||||||||||| || ||||||||||||||||||| | ||||||||           
T  24686991 agcacaatgacaaaaatttgcatgatctctttggtgtgtttgtttgtatttttgacagcatggtgaagatcttcatcacgcaatcaaatagag------- 24686899  T
Q  103 tcatctatttgtgaccgcgtgagaaagatc 132  Q
    | ||||||||| ||||||||||||||||||    
T  24686898 ttatctatttgcgaccgcgtgagaaagatc 24686869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 6 - 154
Target Start/End: Complemental strand, 29331779 - 29331632
Alignment:
Q  6 acaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactca 105  Q
    ||||||||||| ||||||||| ||||||||||||| || ||| ||||||||||| | | |  ||||||||||||| || || ||| | | ||||||||||    
T  29331779 acaatgacaaaaatttgcatggtctctttgatgtgcttgtttgtatttttgaca-catacaaaagatcttcatcatgccgtcaaacaaaaagctaactca 29331681  T
Q  106 tctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaattt 154  Q
    | |||||| |||  | |||| |||||||||||||||||| |||||||||    
T  29331680 tttatttgcgacatcatgaggaagatcctcagcttaatgtcaaaaattt 29331632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 15031984 - 15031917
Alignment:
Q  120 cgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttg 187  Q
    |||||| |||||||||| |||||||| ||||||||  ||||||||||||| |||||||||||||||||    
T  15031984 cgtgaggaagatcctcaacttaatgagaaaaatttgcatggttttctttgttgtgtttgtgtgttttg 15031917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 183
Target Start/End: Original strand, 1852686 - 1852814
Alignment:
Q  49 tatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaa 148  Q
    ||||||||||||| || ||||||||||||||| ||||| |||||||||||      ||||||||| |||||| |||| ||||||||||||  ||||||||    
T  1852686 tatttttgacagcatgttgaagatcttcatcatgcagtcaaatagagagc-----aatctatttgcgaccgcatgaggaagatcctcagcacaatgacaa 1852780  T
Q  149 aaatttatatggttttctttggtgtgtttgtgtgt 183  Q
    || |||  || | ||||||| ||| ||||||||||    
T  1852781 aattttccat-gatttctttcgtgggtttgtgtgt 1852814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 19647738 - 19647806
Alignment:
Q  122 tgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctgg 191  Q
    |||| ||||||||||||  |||||||||| |||| ||||||| |||||||||||||||||||||||||||    
T  19647738 tgaggaagatcctcagcacaatgacaaaagtttacatggttt-ctttggtgtgtttgtgtgttttgctgg 19647806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 15032073 - 15031993
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcac 81  Q
    |||| ||||||||||| ||||||||| |||||||| |||| || ||| ||||||||||||| |||  ||||||||||||||    
T  15032073 tcagtacaatgacaaaaatttgcatggtctctttggtgtgcttgtttgtatttttgacagcatgcataagatcttcatcac 15031993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 26187656 - 26187577
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatca 80  Q
    |||||||||||||||| ||||||||  | |||||| ||||||| ||| ||||||||||| | || ||| |||||||||||    
T  26187656 tcagcacaatgacaaaaatttgcatagtttctttggtgtgtttctttgtatttttgacaacatgttgaggatcttcatca 26187577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 31326224 - 31326173
Alignment:
Q  49 tatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    ||||||||||||| |||||||||| ||||||| ||||| |||||||||||||    
T  31326224 tatttttgacagcatgctgaagattttcatcaagcagtcaaatagagagcta 31326173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 179
Target Start/End: Original strand, 109243 - 109367
Alignment:
Q  49 tatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaa 148  Q
    ||||||||||||| |||||| ||||||||||| |  |||| ||| ||| |||     | ||||||  || || |||||||||||||||||  ||||||||    
T  109243 tatttttgacagcatgctgaggatcttcatcatgttgttatataaagatcta-----tatatttgaaacagcatgagaaagatcctcagcacaatgacaa 109337  T
Q  149 aaatttatatggttttctttggtgtgtttgt 179  Q
    |||||| ||||| | |||||||| |||||||    
T  109338 aaatttgtatgg-tctctttggtttgtttgt 109367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 6431912 - 6431726
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    ||||||| |||||||| ||||||||| |||||||| |||| || ||| ||||||||||||| |||||| ||||||||||| ||||| |||||||||||||    
T  6431912 tcagcacgatgacaaaaatttgcatggtctctttggtgtgcttgtttgtatttttgacagcatgctgaggatcttcatcatgcagtcaaatagagagcta 6431813  T
Q  101 actcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttg 187  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||| |||||    
T  6431812 actcatctatttgcgaccgcatgagaaagatcctcagcttaatgacaaaaatttgcatgattttctttggtgtgtttgtgtattttg 6431726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 32747480 - 32747672
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||||||||||||||| ||||||||| ||||||||  ||| || ||| ||||||||||||| || ||| ||||||||||| ||||| |||||||||| ||    
T  32747480 tcagcacaatgacaaaaatttgcatggtctctttggggtgcttgtttgtatttttgacagcatgttgaggatcttcatcatgcagtcaaatagagagata 32747579  T
Q  101 actcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
     ||||||||||||  ||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||    
T  32747580 cctcatctatttgcaaccgcatgagaaagatcctcagcttaatgacaaaaatttgcatggttttctttggtgtgtttgtgtgttttgatggta 32747672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 49 - 193
Target Start/End: Complemental strand, 5343321 - 5343177
Alignment:
Q  49 tatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaa 148  Q
    ||||||||||||| || ||| ||||||||||| ||||| |||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||    
T  5343321 tatttttgacagcatgttgaggatcttcatcatgcagtcaaatagagagataactcatctatttgcgatcgcgtgagaaagatcctcagcttaatgacaa 5343222  T
Q  149 aaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    ||||||  ||||||||||||||||||||||||||||||| |||||    
T  5343221 aaatttgcatggttttctttggtgtgtttgtgtgttttgatggta 5343177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 24855426 - 24855233
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttat-ttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagct 99  Q
    |||||||||||||||| | ||||||| |||||||| |||  || ||| ||| |||||||| | ||| ||||||||||||||||| || ||||||||||||    
T  24855426 tcagcacaatgacaaaaacttgcatggtctctttggtgtacttgtttgtatattttgacaccatgcagaagatcttcatcacgctgtcaaatagagagct 24855327  T
Q  100 aactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatgg-ttttctttggtgtgtttgtgtgttttgctggt 192  Q
    ||||||| |||||| |||  ||| || ||||||||||||||||||||||||||||  |||| ||||||||| | |||||||||| |||| ||||    
T  24855326 aactcatttatttgcgacaacgtcaggaagatcctcagcttaatgacaaaaatttgcatggtttttctttgttatgtttgtgtgctttgatggt 24855233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 106 - 193
Target Start/End: Complemental strand, 41615685 - 41615598
Alignment:
Q  106 tctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    |||||||  ||||||||||||||||||||| |||||||||||||||||| | ||||||||||| |||||||||| ||||||| |||||    
T  41615685 tctattttcgaccgcgtgagaaagatcctccgcttaatgacaaaaatttgtgtggttttctttcgtgtgtttgtctgttttgatggta 41615598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 187
Target Start/End: Original strand, 23248149 - 23248281
Alignment:
Q  49 tatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaa 148  Q
    ||||||||||||| || ||||||||||||||| ||| | |||||||||| ||     |||||||  || ||| ||||||||||||||| |  ||||||||    
T  23248149 tatttttgacagcatgttgaagatcttcatcatgcaatcaaatagagagata-----tctatttacgatcgcatgagaaagatcctcatcacaatgacaa 23248243  T
Q  149 aaatttatatggttttctttggtgtgtttgtgtgttttg 187  Q
    ||||||  |||| |||||||| |||||||||| ||||||    
T  23248244 aaatttccatgg-tttctttgttgtgtttgtgggttttg 23248281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 1709898 - 1709824
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatctt 75  Q
    |||||||||||||||| ||||||||| ||| |||| |||| || ||| ||||||||||||| |||||| ||||||    
T  1709898 tcagcacaatgacaaaaatttgcatggtctatttggtgtgcttgtttgtatttttgacagcatgctgaggatctt 1709824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 27949349 - 27949410
Alignment:
Q  124 agaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgtttt 186  Q
    ||||||||| |||||  ||||||||||| ||  ||||||| ||||||||||||||||||||||    
T  27949349 agaaagatcttcagcacaatgacaaaaaatttcatggttt-ctttggtgtgtttgtgtgtttt 27949410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 184
Target Start/End: Original strand, 24831390 - 24831570
Alignment:
Q  4 gcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaact 103  Q
    ||||||||||||| ||||||||| |||||||| ||||||| ||| ||||||||||||| | |||| ||||||||||| ||||| |||||||||| |||||    
T  24831390 gcacaatgacaaaaatttgcatggtctctttggtgtgtttgtttgtatttttgacagcatactgaggatcttcatcatgcagtcaaatagagagttaact 24831489  T
Q  104 catctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgtt 184  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||| ||  ||| | ||||||| ||||||||||||||    
T  24831490 catctatttgcgaccgcatgagaaagatcctcagcttaatgacaaaaaatttcatgatattctttgttgtgtttgtgtgtt 24831570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 5 - 192
Target Start/End: Complemental strand, 11223 - 11036
Alignment:
Q  5 cacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactc 104  Q
    |||||||||||| ||||||||| |||||||| |||| || ||| ||||||| ||||| ||| ||||||||||||||||| || ||||||||| |||||||    
T  11223 cacaatgacaaaaatttgcatggtctctttggtgtgcttgtttgtattttttacagcatgcagaagatcttcatcacgccgtcaaatagagaactaactc 11124  T
Q  105 atctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggt 192  Q
    || |||||| |||  |||||| ||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||| ||||    
T  11123 atatatttgcgacaacgtgaggaagatcctcagcttaatgacaaaaatttgcatggttttctttgttgtgtttgtgtgttttgatggt 11036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 41835333 - 41835509
Alignment:
Q  12 acaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatt 111  Q
    ||||| ||||||||| |||||||| ||||||| ||| ||||||||| ||| || || ||||||||||||||| || |||||||||||||     | ||||    
T  41835333 acaaaaatttgcatggtctctttggtgtgtttgtttgtatttttgatagcatgatgtagatcttcatcacgccgtcaaatagagagcta-----tatatt 41835427  T
Q  112 tgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    || |||  | ||||||| |||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||    
T  41835428 tgcgacaacatgagaaaaatcctcagcttaatgacaaaaaattgcatggttttctttggtgtgtttgtgtgttttgctggta 41835509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 175
Target Start/End: Original strand, 11457558 - 11457678
Alignment:
Q  49 tatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaa 148  Q
    ||||||||||||  ||||||||||||||||||||| || |||||||||||      ||||||||| ||| || |||| ||||||||||||  | ||||||    
T  11457558 tatttttgacaggatgctgaagatcttcatcacgctgtcaaatagagagc-----aatctatttgcgacagcatgaggaagatcctcagcacattgacaa 11457652  T
Q  149 aaatttatatggttttctttggtgtgt 175  Q
    ||||||  || | ||||||||||||||    
T  11457653 aaatttccat-gatttctttggtgtgt 11457678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 13037520 - 13037712
Alignment:
Q  1 tcagcacaatgacaaagatttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagcta 100  Q
    |||||||||||||||| ||||||||| ||| |||| |||| || ||| ||||||||||||| |||  |||||||||||||||| || ||| |||||||||    
T  13037520 tcagcacaatgacaaaaatttgcatggtctttttggtgtgcttgtttgtatttttgacagcatgcaaaagatcttcatcacgccgtcaaacagagagcta 13037619  T
Q  101 actcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggta 193  Q
    ||| ||||||||| |||  |||||| ||||||||||||||||||||| ||||||  ||||| ||||||  ||||||||||||||||| |||||    
T  13037620 acttatctatttgcgacaacgtgaggaagatcctcagcttaatgacataaatttgcatggtattcttttttgtgtttgtgtgttttgatggta 13037712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 49 - 188
Target Start/End: Original strand, 20819223 - 20819356
Alignment:
Q  49 tatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaa 148  Q
    |||||| |||||| |||||||||||||||||| | ||||||||||||||||||||     ||||  |||||| |||||||||||||||||  | ||||||    
T  20819223 tattttggacagcatgctgaagatcttcatcatgtagttaaatagagagctaact-----attttcgaccgcatgagaaagatcctcagcacactgacaa 20819317  T
Q  149 aaatttatatggttttctttggtgtgtttgtgtgttttgc 188  Q
    |||||| ||||| ||||||||| |||||||||||||||||    
T  20819318 aaatttctatgg-tttctttggcgtgtttgtgtgttttgc 20819356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 17520394 - 17520522
Alignment:
Q  48 ttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgaca 147  Q
    |||||||||||||| |||||||||||||||||| ||||| |||||||| |||     ||||||||| |||||| ||||||||||| |||||  ||||| |    
T  17520394 ttatttttgacagcatgctgaagatcttcatcatgcagtcaaatagagggct-----atctatttgcgaccgcatgagaaagatcttcagcacaatgaga 17520488  T
Q  148 aaaatttatatggttttctttggtgtgtttgtgtg 182  Q
    ||||||| |||| |||| |||||| ||| ||||||    
T  17520489 aaaatttctatgatttt-tttggtatgtgtgtgtg 17520522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 3514035 - 3513976
Alignment:
Q  126 aaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgtttt 186  Q
    |||||||||||||  ||||||||||| ||  ||||||| ||||||||||||||||||||||    
T  3514035 aaagatcctcagcacaatgacaaaaaatttcatggttt-ctttggtgtgtttgtgtgtttt 3513976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 30 - 191
Target Start/End: Complemental strand, 18436 - 18280
Alignment:
Q  30 tctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatttgtgaccgcgtgagaaag 129  Q
    |||||| ||||||| ||| |||||||  |||| || |||||||||||||||||| || |||||||||||||     |||||||| |||| ||||||||||    
T  18436 tctttggtgtgtttgtttgtatttttttcagcatgttgaagatcttcatcacgctgtcaaatagagagcta-----tctatttgcgaccacgtgagaaag 18342  T
Q  130 atcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctgg 191  Q
    |||||||||||||||||||||||||  ||||||||| | |||||||||||||||||||||||    
T  18341 atcctcagcttaatgacaaaaatttgcatggttttcctcggtgtgtttgtgtgttttgctgg 18280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 16239 - 16410
Alignment:
Q  20 ttgcatgatctctttgatgtgtttatttttatttttgacagcgtgctgaagatcttcatcacgcagttaaatagagagctaactcatctatttgtgaccg 119  Q
    ||||||| |||||||| |||| |  ||| ||||||| || || ||| ||||||||||||||||| || |||||||||| ||||||||||||||| |||      
T  16239 ttgcatggtctctttggtgtgatg-tttgtatttttaacggcatgcagaagatcttcatcacgccgtcaaatagagagttaactcatctatttgcgacaa 16337  T
Q  120 cgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctggt 192  Q
    |||| | |||||||||||||||||||||||| ||   |||||||||||||||||||||||  |||||| ||||    
T  16338 cgtggggaagatcctcagcttaatgacaaaagttagcatggttttctttggtgtgtttgtaggttttgatggt 16410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 66 - 186
Target Start/End: Complemental strand, 16765 - 16650
Alignment:
Q  66 tgaagatcttcatcacgcagttaaatagagagctaactcatctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttc 165  Q
    ||||||||||| ||| ||| |||||||||||||||     || |||||||||||| |||||||||||||| || |||| ||||||||||  ||||||||     
T  16765 tgaagatcttcttcatgcatttaaatagagagcta-----tcaatttgtgaccgcatgagaaagatcctctgcataattacaaaaatttccatggttttt 16671  T
Q  166 tttggtgtgtttgtgtgtttt 186  Q
    || |||| |||||||| ||||    
T  16670 ttcggtgcgtttgtgtttttt 16650  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 190
Target Start/End: Complemental strand, 426697 - 426613
Alignment:
Q  105 atctatttgtgaccgcgtgagaaagatcctcagcttaatgacaaaaatttatatggttttctttggtgtgtttgtgtgttttgctg 190  Q
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T  426697 atctatttgcgacaacatgagaaagatcttcagcacaatgacaaaagttttcctggttt-ctttcgtgtgtttgtgtgttttgctg 426613  T

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