View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_low_49 (Length: 222)
Name: NF9753_1D_low_49
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 208
Target Start/End: Original strand, 29666622 - 29666825
Alignment:
| Q |
6 |
aagttgaagagtacacacattagtagattataagaatgcgattgtttttatttttgagatcataaaaatgtgttgaaattaattggatctcttaaagctt |
105 |
Q |
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| T |
29666622 |
aagttgaagagtacacacattagtagattataagaatgcgattgtttttatttttgagatcataaaaatgtgttgaaattaattggatctcttaaagctt |
29666721 |
T |
|
| Q |
106 |
catgctttgtaac-aattattctaaaagcaaaaatgtcaaatacaatgttcatagcaactaccccgtacatatgttcctaataattcctataaatgtctg |
204 |
Q |
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| T |
29666722 |
catgctttgtaacaaattactctaaaagcaaaaatgtcaaatacaattttcatagcaactaccccgtacatatgttcctaataattcctataaatgtctg |
29666821 |
T |
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| Q |
205 |
caga |
208 |
Q |
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|||| |
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| T |
29666822 |
caga |
29666825 |
T |
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