View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_low_5 (Length: 424)
Name: NF9753_1D_low_5
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 11 - 401
Target Start/End: Complemental strand, 46838273 - 46837883
Alignment:
| Q |
11 |
agaatcatctactactaatctagtatcagcaaacattaaaaggtaccattactctttttctgttttggtaaattctccactggatacttcccaacaaaat |
110 |
Q |
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| T |
46838273 |
agaatcatctactactaatctagtatcagcaaacattaaaaggtaccattactctttttctgttttggtaaattctccactggatacttcccaacaaaat |
46838174 |
T |
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| Q |
111 |
gaattaggctgacaggactaaagtattttattcttctgagtataaatactaaaatgttgtttaatgaatatactgtcacacacaaagagtgatttatacg |
210 |
Q |
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| T |
46838173 |
gaattaggctgacaggactaaagtattttattcttctgagtataaatactaaaatgttgtttaatgaatatactgtcacacacaaagactgatttatacg |
46838074 |
T |
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| Q |
211 |
tacaacagggcgctgtgacaccatcccttgagcttgaagttagctcaaaatatcttctgcttcaagagatgagtacttgaggatggcagcaagaatcctt |
310 |
Q |
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| T |
46838073 |
tacaacagggcgctgtgacaccatcccttgagcttgaagttagctcaaaatatcttctgcttcaagagatgagtacttgaggatggcagcaagaatcctt |
46837974 |
T |
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| Q |
311 |
tctttgtctctggttgggaatgcttccaacagtttcccatctttgtagaagtggaagagaggcactgcctgcattagtttgttgtcaataa |
401 |
Q |
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| T |
46837973 |
tctttgtctctggttgggaatgcttccaacagtttcccatctttgtagaagtggaagagaggcactgcctgcattagtttgttgtcaataa |
46837883 |
T |
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