View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_low_50 (Length: 220)
Name: NF9753_1D_low_50
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 102
Target Start/End: Original strand, 4195532 - 4195628
Alignment:
| Q |
6 |
tggtgttttgttttgtgatagcgcggttgtgcacgtgctttctggaggattaatgggtcttctttggattcaaagtggttggattggtcattattct |
102 |
Q |
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| T |
4195532 |
tggtgttttgttttgtgatagcgcggttgtgcacgtgctttctggaggattaatgggtcttctttggattcaaagtggttggattggtcatgattct |
4195628 |
T |
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Target: chr6 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 32525446 - 32525375
Alignment:
| Q |
143 |
tcacactgatagagagaatttaaatagaacggaaattttttggaatgaaaacgactaccaatatatattttc |
214 |
Q |
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| T |
32525446 |
tcacactgacagagagaatttaaatagaacgaaaatttcttggaatgaaaacgactaccaatatatattttc |
32525375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 32520892 - 32520821
Alignment:
| Q |
143 |
tcacactgatagagagaatttaaatagaacggaaattttttggaatgaaaacgactaccaatatatattttc |
214 |
Q |
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||||||||| | ||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
32520892 |
tcacactgacaaagagaatttaaatagaatggaaatttgttggaatgaaaacgactacaaatatatattttc |
32520821 |
T |
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