View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9753_1D_low_54 (Length: 216)
Name: NF9753_1D_low_54
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_54 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 99 - 216
Target Start/End: Original strand, 12008999 - 12009116
Alignment:
| Q |
99 |
caagaataggagaaatctactcagtttttgctagtacaaattggcctatcatcctgtatacacacgcaaatacccactttaccgcgcgatctcgaaaaag |
198 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||||||||||| |
|
|
| T |
12008999 |
caagaataggagaaatctactcggtttttgctagcacaaattggcctatcatcctctatacacacaccaatacccactttactgcgcgatctcgaaaaag |
12009098 |
T |
|
| Q |
199 |
aggcgtcaactttgcctt |
216 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
12009099 |
aggcgtcaactttgcctt |
12009116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 17888553 - 17888500
Alignment:
| Q |
38 |
ttgggccggagtccaagcgaatgcctggggtcgcctggccatagaaccgcccat |
91 |
Q |
| |
|
||||||||||| || |||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
17888553 |
ttgggccggagcccgggcgagtgcccggggtcgcctggccatagaaccgcccat |
17888500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 31377514 - 31377567
Alignment:
| Q |
38 |
ttgggccggagtccaagcgaatgcctggggtcgcctggccatagaaccgcccat |
91 |
Q |
| |
|
||||||||||| || |||| |||| ||||||||| |||||||||||||||||| |
|
|
| T |
31377514 |
ttgggccggagcccgggcgagtgcccggggtcgccgggccatagaaccgcccat |
31377567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 37189764 - 37189822
Alignment:
| Q |
38 |
ttgggccggagtccaagcgaatgcctggggtcgcctggccatagaaccgcccatagagcac |
98 |
Q |
| |
|
|||||||||||||| ||||||||||||| || | |||||||||||||||||||||||||| |
|
|
| T |
37189764 |
ttgggccggagtccgggcgaatgcctggg-tcac-tggccatagaaccgcccatagagcac |
37189822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 38859976 - 38860029
Alignment:
| Q |
38 |
ttgggccggagtccaagcgaatgcctggggtcgcctggccatagaaccgcccat |
91 |
Q |
| |
|
||||||||||| || |||| |||| ||||||||| |||||||||||||||||| |
|
|
| T |
38859976 |
ttgggccggagcccgggcgagtgcccggggtcgccgggccatagaaccgcccat |
38860029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 8456966 - 8456913
Alignment:
| Q |
38 |
ttgggccggagtccaagcgaatgcctggggtcgcctggccatagaaccgcccat |
91 |
Q |
| |
|
||||||||||| || |||| ||| |||||||||| |||||||||||||||||| |
|
|
| T |
8456966 |
ttgggccggagcccgggcgagtgcatggggtcgccgggccatagaaccgcccat |
8456913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University