View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_low_55 (Length: 212)
Name: NF9753_1D_low_55
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 3894913 - 3894986
Alignment:
| Q |
15 |
ggacatcaaacaatttgcacgtgatacaaatgagaagacaaaagatgctgcaggttcaatgtgggagaaagcca |
88 |
Q |
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| T |
3894913 |
ggacatcaaacaatttgcacgtgatacaaatgagaagacaaaagatgctgcaggttcaatgtgggagaaagcca |
3894986 |
T |
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Target: chr2; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 3895045 - 3895101
Alignment:
| Q |
156 |
ctatgcttatgaggtaaaagacagaaccaatgaagcagcaggttctgtgtgggataa |
212 |
Q |
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| T |
3895045 |
ctatgcttatgaggtaaaagacagaaccaatgaagcagcaggttctgtgtgggataa |
3895101 |
T |
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