View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_1D_low_56 (Length: 211)

Name: NF9753_1D_low_56
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_1D_low_56
NF9753_1D_low_56
[»] chr4 (3 HSPs)
chr4 (29-186)||(23914335-23914492)
chr4 (40-124)||(9987854-9987937)
chr4 (65-146)||(54175070-54175154)
[»] chr7 (2 HSPs)
chr7 (40-116)||(28078152-28078226)
chr7 (36-124)||(18512469-18512555)
[»] chr3 (3 HSPs)
chr3 (40-124)||(33926137-33926220)
chr3 (41-124)||(22609820-22609901)
chr3 (65-124)||(45139521-45139581)
[»] chr2 (3 HSPs)
chr2 (40-116)||(5841069-5841145)
chr2 (40-124)||(25249758-25249840)
chr2 (40-123)||(39499250-39499331)
[»] chr5 (2 HSPs)
chr5 (63-124)||(208970-209030)
chr5 (40-124)||(41014351-41014433)
[»] chr1 (4 HSPs)
chr1 (75-124)||(22324948-22324997)
chr1 (40-124)||(31382234-31382316)
chr1 (41-124)||(32632578-32632659)
chr1 (65-124)||(35005178-35005238)
[»] chr8 (1 HSPs)
chr8 (41-124)||(45071297-45071378)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 6e-70; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 23914335 - 23914492
Alignment:
Q  29 tctcatacaccaaagctctcgcatatgcaagattcaggaagggatcccaccatatttgatgtattgtatgcatgcttaccctatttttacacaagacgtt 128  Q
    |||||||||||||||||||| |||| ||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  23914335 tctcatacaccaaagctctcacatacgcaggattcatgaagggatcccaccatatttgatgtattgtatgcagtcttaccctatttttacacaagacgtt 23914434  T
Q  129 ttcaggacttgaatccgtctcatgataacaactttaccgttgcgtcaataaggtaata 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23914435 ttcaggacttgaatccgtctcatgataacaactttaccgttgcgtcaataaggtaata 23914492  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 9987854 - 9987937
Alignment:
Q  40 aaagctctcgcatatgcaagattcaggaagggatcccaccatatttgatgtattgtatgcatgcttaccctatt-tttacacaaga 124  Q
    ||||||| |||||||||||| |  |||||||| |||||||  ||||| |||||||||||||  ||||||||||| |||||||||||    
T  9987854 aaagctcccgcatatgcaaggtcaaggaaggggtcccacc--atttggtgtattgtatgcagccttaccctattgtttacacaaga 9987937  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 54175154 - 54175070
Alignment:
Q  65 ggaagggatcccaccatatttgatgtattgtatgcatgcttaccctatttttacacaagacg----ttttcaggacttgaatccgt 146  Q
    ||||||| ||||||||| |||| ||||||||| |||  |||||||| ||||||||||||| |    ||| ||||||||||||||||    
T  54175154 ggaaggggtcccaccat-tttggtgtattgtacgcagccttaccctgtttttacacaagaggctgttttccaggacttgaatccgt 54175070  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 28078152 - 28078226
Alignment:
Q  40 aaagctctcgcatatgcaagattcaggaagggatcccaccatatttgatgtattgtatgcatgcttaccctattttt 116  Q
    |||||||||||||||||| ||||| ||||||| |||||||  ||||| ||||||| |||||  |||||||| |||||    
T  28078152 aaagctctcgcatatgcaggattcgggaaggggtcccacc--atttggtgtattgcatgcaaccttaccctgttttt 28078226  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 18512469 - 18512555
Alignment:
Q  36 caccaaagctctcgcatatgcaagattcaggaagggatcccaccatatttgatgtattgtatgcatgcttaccctatttttacacaaga 124  Q
    ||||||||||| |||||| ||| | | | ||||||| |||||||||  | | ||||||||| |||  ||||||||||||||||||||||    
T  18512469 caccaaagctcccgcatacgcagggtccgggaaggggtcccaccat--tcggtgtattgtacgcagccttaccctatttttacacaaga 18512555  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 33926220 - 33926137
Alignment:
Q  40 aaagctctcgcatatgcaagattcaggaagggatcccaccatatttgatgtattgtatgcatgcttaccctatttttacacaaga 124  Q
    |||||||||||||||||| | | ||||||||| ||||||||| | || |||||||||  ||  |||||||| |||||||||||||    
T  33926220 aaagctctcgcatatgcagggtccaggaaggggtcccaccat-tatggtgtattgtacacagccttaccctgtttttacacaaga 33926137  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 22609901 - 22609820
Alignment:
Q  41 aagctctcgcatatgcaagattcaggaagggatcccaccatatttgatgtattgtatgcatgcttaccctatttttacacaaga 124  Q
    |||||| |||||| ||||| | | ||||||| |||||||||  ||| ||||||||| |||  |||||||| |||||||||||||    
T  22609901 aagctcccgcatacgcaaggtccgggaaggggtcccaccat--ttggtgtattgtacgcagccttaccctgtttttacacaaga 22609820  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 45139521 - 45139581
Alignment:
Q  65 ggaagggatcccaccatatttgatgtattgtatgcatgcttaccctat-ttttacacaaga 124  Q
    ||||||| ||||||||| |||| |||||||||||||  |||||||| | ||||||||||||    
T  45139521 ggaaggggtcccaccatttttggtgtattgtatgcagccttaccctgtgttttacacaaga 45139581  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 5841145 - 5841069
Alignment:
Q  40 aaagctctcgcatatgcaagattcaggaagggatcccaccatatttgatgtattgtatgcatgcttaccctattttt 116  Q
    ||||||| |||||||||  | | | ||||||| |||||||||  ||||||||||||| |||| ||||||||||||||    
T  5841145 aaagctcccgcatatgcggggtccgggaaggggtcccaccattattgatgtattgtacgcatccttaccctattttt 5841069  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 25249758 - 25249840
Alignment:
Q  40 aaagctctcgcatatgcaagattcaggaagggatcccaccatatttgatgtattgtatgcatgcttaccctatttttacacaaga 124  Q
    ||||||| |||||| ||| | ||| |||||||||||||||  ||||| ||||||||| |||  |||||||| ||| |||||||||    
T  25249758 aaagctcacgcatacgcagggttcgggaagggatcccacc--atttggtgtattgtacgcagccttaccctgtttgtacacaaga 25249840  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 39499250 - 39499331
Alignment:
Q  40 aaagctctcgcatatgcaagattcaggaagggatcccaccatatttgatgtattgtatgcatgcttaccctatttttacacaag 123  Q
    ||||||| |||||| ||| |||||   |||||||||||||||  ||||||||||||| |||   |||||||||||||| |||||    
T  39499250 aaagctcccgcatacgcaggattcgaaaagggatcccaccat--ttgatgtattgtacgcagctttaccctatttttatacaag 39499331  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 208970 - 209030
Alignment:
Q  63 caggaagggatcccaccatatttgatgtattgtatgcatgcttaccctatttttacacaaga 124  Q
    ||||||||| ||||||||| |||| ||||||| |||||  |||||||| |||||||||||||    
T  208970 caggaaggggtcccaccat-tttggtgtattgaatgcagccttaccctgtttttacacaaga 209030  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 41014433 - 41014351
Alignment:
Q  40 aaagctctcgcatatgcaagattcaggaagggatcccaccatatttgatgtattgtatgcatgcttaccctatttttacacaaga 124  Q
    ||||||| |||||||||  | | ||||||||| |||||||||  ||| ||||||||| |||  |||||||| |||||||||||||    
T  41014433 aaagctcccgcatatgcggggtccaggaaggggtcccaccat--ttggtgtattgtacgcagccttaccctgtttttacacaaga 41014351  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 22324997 - 22324948
Alignment:
Q  75 ccaccatatttgatgtattgtatgcatgcttaccctatttttacacaaga 124  Q
    ||||||| |||| |||||||||||||  |||||||| |||||||||||||    
T  22324997 ccaccatttttggtgtattgtatgcagccttaccctgtttttacacaaga 22324948  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 31382234 - 31382316
Alignment:
Q  40 aaagctctcgcatatgcaagattcaggaagggatcccaccatatttgatgtattgtatgcatgcttaccctatttttacacaaga 124  Q
    ||||||| |||||||||| | | ||||||||| |||||||||  ||| ||||||||| |||  |||| ||| |||||||||||||    
T  31382234 aaagctcccgcatatgcagggtccaggaaggggtcccaccat--ttggtgtattgtacgcagccttatcctgtttttacacaaga 31382316  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 32632578 - 32632659
Alignment:
Q  41 aagctctcgcatatgcaagattcaggaagggatcccaccatatttgatgtattgtatgcatgcttaccctatttttacacaaga 124  Q
    |||||| |||||||||| | ||  ||||||| |||||||||  ||| ||||||||| |||  |||||||| |||||||||||||    
T  32632578 aagctcccgcatatgcagggtttgggaaggggtcccaccat--ttggtgtattgtacgcagccttaccctgtttttacacaaga 32632659  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 35005238 - 35005178
Alignment:
Q  65 ggaagggatcccaccatatttgatgtattgtatgcatgcttaccct-atttttacacaaga 124  Q
    ||||||| ||||||||| |||| |||||||||||||  ||||||||  |||||||||||||    
T  35005238 ggaaggggtcccaccatttttggtgtattgtatgcagccttaccctgttttttacacaaga 35005178  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 45071378 - 45071297
Alignment:
Q  41 aagctctcgcatatgcaagattcaggaagggatcccaccatatttgatgtattgtatgcatgcttaccctatttttacacaaga 124  Q
    |||||| |||||| ||||| | | ||||||| |||||||||  ||| ||||||||| |||  |||||||| |||||||||||||    
T  45071378 aagctcccgcatacgcaaggtccgggaaggggtcccaccat--ttggtgtattgtacgcagccttaccctgtttttacacaaga 45071297  T

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