View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_1D_low_58 (Length: 211)

Name: NF9753_1D_low_58
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_1D_low_58
NF9753_1D_low_58
[»] chr4 (2 HSPs)
chr4 (25-201)||(29981963-29982139)
chr4 (95-182)||(8155967-8156063)
[»] chr7 (1 HSPs)
chr7 (96-201)||(47370013-47370118)
[»] chr5 (1 HSPs)
chr5 (128-201)||(25523880-25523953)
[»] chr1 (2 HSPs)
chr1 (128-201)||(36613657-36613730)
chr1 (128-201)||(7674715-7674788)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 29982139 - 29981963
Alignment:
Q  25 tcattaccacaccaatagtgatggcagtgtataaaccagctaggagaggatcaccatacatgcataaaacgattcagcgcaaagatccagacacggagct 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29982139 tcattaccacaccaatagtgatggcagtgtataaaccagctaggagaggatcaccatacatgcataaaacgattcagcgcaaagatccagacacggagct 29982040  T
Q  125 taggatactagcttgtttccacagcacctacaacattcctaccttaatcaatctaatagaatcatcaagaggaacac 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29982039 taggatactagcttgtttccacagcacctacaacattcctaccttaatcaatctaatagaatcatcaagaggaacac 29981963  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 182
Target Start/End: Original strand, 8155967 - 8156063
Alignment:
Q  95 gattcagcgcaaagatccagacacggagcttaggatactagcttgtttcca---------cagcacctacaacattcctaccttaatcaatctaata 182  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||    
T  8155967 gattcagcgcaaagatccagacaccgagcttaggatactagcttgtttccatagcacggtcagcacctacaacattcctaccttaatcaatctaata 8156063  T

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Target: chr7 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 96 - 201
Target Start/End: Original strand, 47370013 - 47370118
Alignment:
Q  96 attcagcgcaaagatccagacacggagcttaggatactagcttgtttccacagcacctacaacattcctaccttaatcaatctaatagaatcatcaagag 195  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47370013 attcagcgcaaagatccagacgcggagcttaggatactagcttgtttccacagcacctacaacattcctaccttaatcaatctaatagaatcatcaagag 47370112  T
Q  196 gaacac 201  Q
    ||||||    
T  47370113 gaacac 47370118  T

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Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 25523953 - 25523880
Alignment:
Q  128 gatactagcttgtttccacagcacctacaacattcctaccttaatcaatctaatagaatcatcaagaggaacac 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25523953 gatactagcttgtttccacagcacctacaacattcctaccttaatcaatctaatagaatcatcaagaggaacac 25523880  T

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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 36613730 - 36613657
Alignment:
Q  128 gatactagcttgtttccacagcacctacaacattcctaccttaatcaatctaatagaatcatcaagaggaacac 201  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36613730 gatactagcttgtttccacaacacctacaacattcctaccttaatcaatctaatagaatcatcaagaggaacac 36613657  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 7674715 - 7674788
Alignment:
Q  128 gatactagcttgtttccacagcacctacaacattcctaccttaatcaatctaatagaatcatcaagaggaacac 201  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7674715 gatactagcttgtttcaacagcacctacaacactcctaccttaatcaatctaatagaatcatcaagaggaacac 7674788  T

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