View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_low_6 (Length: 411)
Name: NF9753_1D_low_6
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_6 |
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| [»] scaffold0112 (1 HSPs) |
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| [»] scaffold0093 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 6 - 393
Target Start/End: Complemental strand, 15617349 - 15616962
Alignment:
| Q |
6 |
agatcaaattctttacttgtggaggcactttcagtctctaaatatcataccaatatcccgatcgtcgaatgcgagaaacatataccaattcttccacaca |
105 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15617349 |
agatcaaattctttacttttggaggcactttcagtctctaaatatcataccaatatctcgatcgttgaatgcgagaaacatataccaattcttccacaca |
15617250 |
T |
|
| Q |
106 |
caatatgtaagtacttttaacaaaatataaaccattcttcctggatttcaatattaacctatcatccaccacctgatcgagtaacaatgttcgacgaaaa |
205 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15617249 |
caatatgtaagtacttttaacagaatataaaccattcttctcggatttcaatattaacctatcatccaccacctgatcgagtaacaatgttcgaagaaaa |
15617150 |
T |
|
| Q |
206 |
gattcggctgtattgaaactaaacacttgttgaatcacttcctcattccagccattcgacgaggaattcatcaaactattcatatgaaaatccctcacaa |
305 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15617149 |
aattcagctgtattgaaactaaacacttgttgaatcacttcctcattctagccattcgacgaggaattcatcagactattcatatgaaaatccctcacaa |
15617050 |
T |
|
| Q |
306 |
agtttacccccacaatatttccatctatgtgatcctcattcactaaccatggttcatcaagtatagatatagagtgatccgtactgat |
393 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15617049 |
agtttacccccacaatatttccatctatgtcatcctcattcactaaccatggttcatcaagtatagatatagagtgacccgtactgat |
15616962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 382
Target Start/End: Complemental strand, 16042920 - 16042836
Alignment:
| Q |
292 |
aaaatccctcacaaagtttacccccacaatatttccatctatgtgatcctcattcactaaccatggttcatcaagtatagatatagagtga |
382 |
Q |
| |
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||||||||||||||||||| | |||| |||||||||||| ||||||||| |||| | ||||||||| |||||| |||||||||||| |
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| T |
16042920 |
aaaatccctcacaaagttttcacccataatatttccatccatgtgatccccattta------atggttcataaagtattgatatagagtga |
16042836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 8 - 389
Target Start/End: Original strand, 43219005 - 43219386
Alignment:
| Q |
8 |
atcaaattctttacttgtggaggcactttcagtctctaaatatcataccaatatcccgatcgtcgaatgcgagaaacatataccaattcttccacacaca |
107 |
Q |
| |
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|||||||||||||||| || || |||||||||||| ||||| || ||||| |||| | || ||||| | ||||||||| |||||||||||||||||||| |
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| T |
43219005 |
atcaaattctttactttaggcggaactttcagtctccaaataacagaccaaaatcctggtcttcgaaggtgagaaacatctaccaattcttccacacaca |
43219104 |
T |
|
| Q |
108 |
atatgtaagtacttttaacaaaatataaaccattcttcctggatttcaatattaacctatcatccaccacctgatcgagtaacaatgttcgacgaaaaga |
207 |
Q |
| |
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|| |||||| | | || || ||||||||||||| ||| | |||| | ||||| || ||||||||||||||||| |||||| ||||||| || ||| |
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| T |
43219105 |
atctgtaagcaatcttgacggaatataaaccatttttctcagctttccagattaatctgtcatccaccacctgatcaagtaaccttgttcgaataataga |
43219204 |
T |
|
| Q |
208 |
ttcggctgtattgaaactaaacacttgttgaatcacttcctcattccagccattcgacgaggaattcatcaaactattcatatgaaaatccctcacaaag |
307 |
Q |
| |
|
|||||| ||| |||||||||||||||||| ||||||| ||||| || |||| |||| || ||||| |||| || || |||||||||||||||| |
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| T |
43219205 |
gtcggctatatcaggactaaacacttgttgaataacttcctggttccaacccttcgtcgagacatgcatcagactactcccataaaaatccctcacaaag |
43219304 |
T |
|
| Q |
308 |
tttacccccacaatatttccatctatgtgatcctcattcactaaccatggttcatcaagtatagatatagagtgatccgtac |
389 |
Q |
| |
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||| | |||| |||||||||||| ||| | ||| |||||| ||||| |||||||||||||| |||||||||||| |||||| |
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| T |
43219305 |
tttgcacccataatatttccatcaatgcggtccccattcaacaaccaaggttcatcaagtattgatatagagtgacccgtac |
43219386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 26131013 - 26130880
Alignment:
| Q |
8 |
atcaaattctttacttgtggaggcactttcagtctctaaatatcataccaatatcccgatcgtcgaatgcgagaaacatataccaattcttccacacaca |
107 |
Q |
| |
|
|||||||||||||||| | | || ||||||| |||| ||||| || | ||| |||| | | ||||| | ||||||||| || ||||||||||||||||| |
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| T |
26131013 |
atcaaattctttactttttgcggaactttcaatctccaaataacagatcaaaatcctggccttcgaaggtgagaaacatctatcaattcttccacacaca |
26130914 |
T |
|
| Q |
108 |
atatgtaagtacttttaacaaaatataaaccatt |
141 |
Q |
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|| | |||| ||| || || ||||||||||||| |
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| T |
26130913 |
atctataagcactcttgacggaatataaaccatt |
26130880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 30 - 248
Target Start/End: Complemental strand, 33692 - 33474
Alignment:
| Q |
30 |
gcactttcagtctctaaatatcataccaatatcccgatcgtcgaatgcgagaaacatataccaattcttccacacacaatatgtaagtacttttaacaaa |
129 |
Q |
| |
|
||||||||||| || ||||| || ||||||||||| | |||| | |||||||| ||||||||||||| | ||||| | |||| ||| || | | |
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| T |
33692 |
gcactttcagtgtccaaataccagaccaatatccccgcctccgaaggtgagaaacagccaccaattcttccatagacaatctttaagcactcttgaagga |
33593 |
T |
|
| Q |
130 |
atataaaccattcttcctggatttcaatattaacctatcatccaccacctgatcgagtaacaatgttcgacgaaaagattcggctgtattgaaactaaac |
229 |
Q |
| |
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|||||||||||||||| | |||| |||||||||||||||||||||||||||| |||||| ||||| || ||| |||||||||| ||| ||||| | |
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| T |
33592 |
atataaaccattcttctcagctttccatattaacctatcatccaccacctgatcaagtaacgatgtttgaagaatagattcggctatatcagaactataa |
33493 |
T |
|
| Q |
230 |
acttgttgaatcacttcct |
248 |
Q |
| |
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||||||||||| ||||||| |
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| T |
33492 |
acttgttgaattacttcct |
33474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 264
Target Start/End: Original strand, 17349 - 17535
Alignment:
| Q |
78 |
gagaaacatataccaattcttccacacacaatatgtaagtacttttaacaaaatataaaccattcttcctggatttcaatattaacctatcatccaccac |
177 |
Q |
| |
|
||||||||| ||||||||||||| | ||||| | |||| ||| || | ||||||||||||| ||| | |||| |||||||||||||||||||||| |
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|
| T |
17349 |
gagaaacatccaccaattcttccatagacaatctttaagcactcttgaaggaatataaaccattattctcagctttccatattaacctatcatccaccac |
17448 |
T |
|
| Q |
178 |
ctgatcgagtaacaatgttcgacgaaaagattcggctgtattgaaactaaacacttgttgaatcacttcctcattccagccattcga |
264 |
Q |
| |
|
|||||| |||||| |||||||| ||| |||||||| | ||| ||||||| |||||||||| ||||||| |||||||| ||||| |
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|
| T |
17449 |
ctgatcaagtaacgatgttcgaagaatagattcggttatatcagaactaaaaccttgttgaattacttcctagttccagcctttcga |
17535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 292 - 382
Target Start/End: Complemental strand, 4609010 - 4608920
Alignment:
| Q |
292 |
aaaatccctcacaaagtttacccccacaatatttccatctatgtgatcctcattcactaaccatggttcatcaagtatagatatagagtga |
382 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||| | ||| |||||| ||||||| |||| ||||||||||||||||||| |
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|
| T |
4609010 |
aaaatccctcacaaagtttttccccacactatttccatctatgcggtccccattcaaaaaccatgactcatgaagtatagatatagagtga |
4608920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 20247375 - 20247274
Alignment:
| Q |
8 |
atcaaattctttacttgtggaggcactttcagtctctaaatatcataccaatatcccgatcgtcgaatgcgagaaacatataccaattcttccacacaca |
107 |
Q |
| |
|
|||||||||||||||| || || |||||||||||| ||||| || ||||| |||| | || ||||| | ||||||||| ||| |||||||||||||||| |
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|
| T |
20247375 |
atcaaattctttactttaggtggaactttcagtctccaaataacagaccaaaatcctggtcttcgaaggtgagaaacatctactaattcttccacacaca |
20247276 |
T |
|
| Q |
108 |
at |
109 |
Q |
| |
|
|| |
|
|
| T |
20247275 |
at |
20247274 |
T |
|
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