View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_1D_low_60 (Length: 210)

Name: NF9753_1D_low_60
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_1D_low_60
NF9753_1D_low_60
[»] chr2 (14 HSPs)
chr2 (2-210)||(31251567-31251775)
chr2 (2-210)||(31303074-31303282)
chr2 (10-210)||(31242631-31242831)
chr2 (2-210)||(31289259-31289467)
chr2 (1-210)||(31313758-31313967)
chr2 (2-210)||(31353820-31354028)
chr2 (2-210)||(31371882-31372090)
chr2 (2-210)||(31382348-31382556)
chr2 (2-209)||(31279099-31279306)
chr2 (15-204)||(31230174-31230363)
chr2 (15-196)||(31177432-31177613)
chr2 (39-204)||(31196734-31196899)
chr2 (39-204)||(31215346-31215511)
chr2 (15-204)||(31188758-31188947)
[»] chr5 (1 HSPs)
chr5 (4-210)||(36210550-36210756)
[»] chr8 (2 HSPs)
chr8 (13-196)||(21001578-21001761)
chr8 (13-196)||(21009606-21009789)


Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 31251567 - 31251775
Alignment:
Q  2 catataggaaaaattaccaaataaagcacgagctaaactattgttttccaagtactcatatatcagcaacaactgatctccctctacacaacaaccgtgg 101  Q
    |||| |||||||||||||||||||||||||||| | |||||||||||||||||| || |||| ||| ||||||||||||||||| |||||||||||||||    
T  31251567 cataaaggaaaaattaccaaataaagcacgagcaagactattgttttccaagtattcgtataccagaaacaactgatctccctccacacaacaaccgtgg 31251666  T
Q  102 agtctaacaagataagggtgttgcaaagcagaaatcatgccgatctcagttaaaaactcacgattcccttgctttgatttagaagaaagttgcttcactg 201  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31251667 agtctaacaagataagggtgttgcaaagcagaaatcatgcctatctcgtttaaaaactcacgattcccttgctttgatttagaagaaagttgcttcactg 31251766  T
Q  202 ctatcaatg 210  Q
    |||||||||    
T  31251767 ctatcaatg 31251775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 31303074 - 31303282
Alignment:
Q  2 catataggaaaaattaccaaataaagcacgagctaaactattgttttccaagtactcatatatcagcaacaactgatctccctctacacaacaaccgtgg 101  Q
    ||||||||||||||||||||||||||||||||| |  ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  31303074 catataggaaaaattaccaaataaagcacgagcaaggctattgttttccaagtattcatatatcagcaacaattgatctccctccacacaacaaccgtgg 31303173  T
Q  102 agtctaacaagataagggtgttgcaaagcagaaatcatgccgatctcagttaaaaactcacgattcccttgctttgatttagaagaaagttgcttcactg 201  Q
    ||| ||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31303174 agtttaacaagataaggatgttgcaaagcagaaatcatgcctatctcatttaaaaactcacgattcccttgctttgatttagaagaaagttgcttcactg 31303273  T
Q  202 ctatcaatg 210  Q
    ||| |||||    
T  31303274 ctaccaatg 31303282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 31242631 - 31242831
Alignment:
Q  10 aaaaattaccaaataaagcacgagctaaactattgttttccaagtactcatatatcagcaacaactgatctccctctacacaacaaccgtggagtctaac 109  Q
    ||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  31242631 aaaaattaccaaataaagcacgagcaagactattgttttccaagtattcatatatcagcaacaattgatctccctccacacaacaaccgtggagtttaac 31242730  T
Q  110 aagataagggtgttgcaaagcagaaatcatgccgatctcagttaaaaactcacgattcccttgctttgatttagaagaaagttgcttcactgctatcaat 209  Q
    ||||||||||||||||||||| ||||||||||| |||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31242731 aagataagggtgttgcaaagctgaaatcatgcctatctcgtttaaaaactcacgattcccttgctttgattttgaagaaagttgcttcactgctatcaat 31242830  T
Q  210 g 210  Q
    |    
T  31242831 g 31242831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 31289259 - 31289467
Alignment:
Q  2 catataggaaaaattaccaaataaagcacgagctaaactattgttttccaagtactcatatatcagcaacaactgatctccctctacacaacaaccgtgg 101  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||| || |||| ||||| ||||||||||||||| |||||||||||||||    
T  31289259 catataggaaaaattaccaaataaagcacgagcaagactattgttttccaagtattcgtataccagcatcaactgatctccctccacacaacaaccgtgg 31289358  T
Q  102 agtctaacaagataagggtgttgcaaagcagaaatcatgccgatctcagttaaaaactcacgattcccttgctttgatttagaagaaagttgcttcactg 201  Q
    ||| ||||||||||||| |||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31289359 agtttaacaagataaggatgttgcaaagcagaaatcattcctatctcatttaaaaactcacgattcccttgctttgattttgaagaaagttgcttcactg 31289458  T
Q  202 ctatcaatg 210  Q
    |||||||||    
T  31289459 ctatcaatg 31289467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 31313758 - 31313967
Alignment:
Q  1 tcatataggaaaaattaccaaataaagcacgagctaaactattgttttccaagtactcatatatcagcaacaactgatctccctctacacaacaaccgtg 100  Q
    |||||||||||||||||||||||||||||||||| |  ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  31313758 tcatataggaaaaattaccaaataaagcacgagcaaggctattgttttccaagtattcatatatcagcaacaattgatctccctccacacaacaaccgtg 31313857  T
Q  101 gagtctaacaagataagggtgttgcaaagcagaaatcatgccgatctcagttaaaaactcacgattcccttgctttgatttagaagaaagttgcttcact 200  Q
    |||||||||||||||||| | |||||||||| ||||||| || |||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||    
T  31313858 gagtctaacaagataaggatattgcaaagcataaatcattcctatctcatttaaaaactcacggttcccttgctttgattcagcagaaagttgcttcact 31313957  T
Q  201 gctatcaatg 210  Q
    ||||||||||    
T  31313958 gctatcaatg 31313967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 31353820 - 31354028
Alignment:
Q  2 catataggaaaaattaccaaataaagcacgagctaaactattgttttccaagtactcatatatcagcaacaactgatctccctctacacaacaaccgtgg 101  Q
    |||||||||||||||||| |||||||||||||| | |||||| || |||||||| ||||||||||||||||| ||||||||||| ||||||||||| |      
T  31353820 catataggaaaaattaccgaataaagcacgagcaagactattattctccaagtattcatatatcagcaacaattgatctccctccacacaacaaccataa 31353919  T
Q  102 agtctaacaagataagggtgttgcaaagcagaaatcatgccgatctcagttaaaaactcacgattcccttgctttgatttagaagaaagttgcttcactg 201  Q
    ||| |||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31353920 agtttaacaagataagggtgttgcaacgcagaaatcatgcctatctcatttaaaaactcacgattcccttgctttgatttagaagaaagttgcttcactg 31354019  T
Q  202 ctatcaatg 210  Q
    |||||||||    
T  31354020 ctatcaatg 31354028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 31371882 - 31372090
Alignment:
Q  2 catataggaaaaattaccaaataaagcacgagctaaactattgttttccaagtactcatatatcagcaacaactgatctccctctacacaacaaccgtgg 101  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  31371882 catacaggaaaaattaccaaataaagcacgagctagactattgttttccaagtattcatatatcagcaacaattgatctccctccacacaacaaccgtgg 31371981  T
Q  102 agtctaacaagataagggtgttgcaaagcagaaatcatgccgatctcagttaaaaactcacgattcccttgctttgatttagaagaaagttgcttcactg 201  Q
    ||| ||||||||||||| |||||||||||||||||||| || |||||  |||||||||| |||||||||||| |||| |||||||| ||||| || ||||    
T  31371982 agtttaacaagataaggatgttgcaaagcagaaatcattcctatctcgtttaaaaactcgcgattcccttgccttgaattagaagagagttgtttgactg 31372081  T
Q  202 ctatcaatg 210  Q
    |||||||||    
T  31372082 ctatcaatg 31372090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 31382348 - 31382556
Alignment:
Q  2 catataggaaaaattaccaaataaagcacgagctaaactattgttttccaagtactcatatatcagcaacaactgatctccctctacacaacaaccgtgg 101  Q
    |||||||||||| ||||||||||||||||| |  | |||||||||||||| ||| ||||||||||||||||| ||||||||||| ||||||||||| | |    
T  31382348 catataggaaaagttaccaaataaagcacgggaaagactattgttttccatgtattcatatatcagcaacaattgatctccctccacacaacaaccatag 31382447  T
Q  102 agtctaacaagataagggtgttgcaaagcagaaatcatgccgatctcagttaaaaactcacgattcccttgctttgatttagaagaaagttgcttcactg 201  Q
    ||| |||||||||||||||||||||||||||||||||| || |||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31382448 agtttaacaagataagggtgttgcaaagcagaaatcattcctatctcgtttagaaactcacgattcccttgctttgatttagaagaaagttgcttcactg 31382547  T
Q  202 ctatcaatg 210  Q
    |||||||||    
T  31382548 ctatcaatg 31382556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 2 - 209
Target Start/End: Original strand, 31279099 - 31279306
Alignment:
Q  2 catataggaaaaattaccaaataaagcacgagctaaactattgttttccaagtactcatatatcagcaacaactgatctccctctacacaacaaccgtgg 101  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||| ||| |||||||||||||| ||||||||||| || ||||||||||| | |    
T  31279099 catataggaaaaattaccaaataaagcacgagcgagactattgttttccatgtattcatatatcagcaataactgatctccttccacacaacaaccatag 31279198  T
Q  102 agtctaacaagataagggtgttgcaaagcagaaatcatgccgatctcagttaaaaactcacgattcccttgctttgatttagaagaaagttgcttcactg 201  Q
    ||| ||||||||||||| |||||||||||||||||||| || |||||  ||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  31279199 agtttaacaagataaggatgttgcaaagcagaaatcattcctatctcgtttaaaaattcacgattcccttgcgttgatttagaagaaagttgcttcactg 31279298  T
Q  202 ctatcaat 209  Q
    ||||||||    
T  31279299 ctatcaat 31279306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 31230174 - 31230363
Alignment:
Q  15 ttaccaaataaagcacgagctaaactattgttttccaagtactcatatatcagcaacaactgatctccctctacacaacaaccgtggagtctaacaagat 114  Q
    |||||||| ||||||| ||| |  ||||| ||||||| ||| ||||||||||||| ||||||||||||||| | ||||||||| | |||  |||| |||     
T  31230174 ttaccaaacaaagcacaagcaaggctattattttccatgtattcatatatcagcagcaactgatctccctccatacaacaaccatagagcttaactagac 31230273  T
Q  115 aagggtgttgcaaagcagaaatcatgccgatctcagttaaaaactcacgattcccttgctttgatttagaagaaagttgcttcactgcta 204  Q
    |||| ||||||||||||||||||| |||||||||| | | ||| || || |||||||||||||||||||||||||| ||||| |||||||    
T  31230274 aaggatgttgcaaagcagaaatcaagccgatctcattaataaattcgcggttcccttgctttgatttagaagaaagctgcttaactgcta 31230363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 31177432 - 31177613
Alignment:
Q  15 ttaccaaataaagcacgagctaaactattgttttccaagtactcatatatcagcaacaactgatctccctctacacaacaaccgtggagtctaacaagat 114  Q
    |||||||| ||||||| ||| |  ||||| ||||||| ||| |||||||| ||||| |||||||||||||| | ||| ||||||| |||  |||| |||     
T  31177432 ttaccaaacaaagcacaagcaaggctattattttccatgtattcatatattagcaataactgatctccctccatacagcaaccgtagagcttaactagac 31177531  T
Q  115 aagggtgttgcaaagcagaaatcatgccgatctcagttaaaaactcacgattcccttgctttgatttagaagaaagttgctt 196  Q
    |||||||||||||||||||||||| |||||||||  ||| ||| || || |||||||||||||||||||||||||| |||||    
T  31177532 aagggtgttgcaaagcagaaatcaagccgatctcgtttataaattcgcggttcccttgctttgatttagaagaaagctgctt 31177613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 39 - 204
Target Start/End: Original strand, 31196734 - 31196899
Alignment:
Q  39 ctattgttttccaagtactcatatatcagcaacaactgatctccctctacacaacaaccgtggagtctaacaagataagggtgttgcaaagcagaaatca 138  Q
    ||||| ||||||| ||| |||||||| ||||| |||||||||||||| | ||| ||||| | |||  |||| ||| ||||||||||||||||||||||||    
T  31196734 ctattattttccatgtattcatatattagcaataactgatctccctccatacagcaaccatagagcttaactagacaagggtgttgcaaagcagaaatca 31196833  T
Q  139 tgccgatctcagttaaaaactcacgattcccttgctttgatttagaagaaagttgcttcactgcta 204  Q
     |||||||||| ||| ||| || || |||||||||||||||||||||||||| ||||| |||||||    
T  31196834 agccgatctcatttataaattcgcggttcccttgctttgatttagaagaaagctgcttaactgcta 31196899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 39 - 204
Target Start/End: Original strand, 31215346 - 31215511
Alignment:
Q  39 ctattgttttccaagtactcatatatcagcaacaactgatctccctctacacaacaaccgtggagtctaacaagataagggtgttgcaaagcagaaatca 138  Q
    ||||| ||||||| ||| |||||||| ||||| |||||||||||||| | ||| ||||| | |||  |||| ||| ||||||||||||||||||||||||    
T  31215346 ctattattttccatgtattcatatattagcaataactgatctccctccatacagcaaccatagagcttaactagacaagggtgttgcaaagcagaaatca 31215445  T
Q  139 tgccgatctcagttaaaaactcacgattcccttgctttgatttagaagaaagttgcttcactgcta 204  Q
     |||||||||| ||| ||| || || |||||||||||||||||||||||||| ||||| |||||||    
T  31215446 agccgatctcatttataaattcgcggttcccttgctttgatttagaagaaagctgcttaactgcta 31215511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 31188758 - 31188947
Alignment:
Q  15 ttaccaaataaagcacgagctaaactattgttttccaagtactcatatatcagcaacaactgatctccctctacacaacaaccgtggagtctaacaagat 114  Q
    |||||||| ||||||| ||| |  ||||| ||||||| ||| |||||||| || || |||||||||||||| | ||| ||||| | |||  |||| |||     
T  31188758 ttaccaaacaaagcacaagcaaggctattattttccatgtattcatatattagtaataactgatctccctccatacagcaaccatagagcttaactagac 31188857  T
Q  115 aagggtgttgcaaagcagaaatcatgccgatctcagttaaaaactcacgattcccttgctttgatttagaagaaagttgcttcactgcta 204  Q
    |||||||||||||||||||||||| |||||||||| ||| ||| || || |||||||||||||||||||| ||||| ||||| |||||||    
T  31188858 aagggtgttgcaaagcagaaatcaagccgatctcatttataaattcgcggttcccttgctttgatttagaggaaagctgcttaactgcta 31188947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 210
Target Start/End: Original strand, 36210550 - 36210756
Alignment:
Q  4 tataggaaaaattaccaaataaagcacgagctaaactattgttttccaagtactcatatatcagcaacaactgatctccctctacacaacaaccgtggag 103  Q
    |||||||| |||||||||||||||||||||| | ||| || |||||||| || |||||||||| ||  |||||||||||||| ||||| || || | |||    
T  36210550 tataggaagaattaccaaataaagcacgagcaagactgttattttccaaatattcatatatcaacattaactgatctccctccacacagcatccatagag 36210649  T
Q  104 tctaacaagataagggtgttgcaaagcagaaatcatgccgatctcagttaaaaactcacgattcccttgctttgatttagaagaaagttgcttcactgct 203  Q
    | ||||||||| ||||||||||||||| || ||||||||||| ||| ||||||| || ||||||||||||||||||||||| |||||| |||| ||||||    
T  36210650 tttaacaagatgagggtgttgcaaagccgagatcatgccgatttcatttaaaaattcgcgattcccttgctttgatttagaggaaagtagcttaactgct 36210749  T
Q  204 atcaatg 210  Q
    |||||||    
T  36210750 atcaatg 36210756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 21001761 - 21001578
Alignment:
Q  13 aattaccaaataaagcacgagctaaactattgttttccaagtactcatatatcagcaacaactgatctccctctacacaacaaccgtggagtctaacaag 112  Q
    |||||||||||| |||| |||| |  ||||||||||||| ||| |||||||||| ||||||||||||  | || | |||  | || | |||  |||||||    
T  21001761 aattaccaaatagagcatgagcaaggctattgttttccatgtattcatatatcaacaacaactgatcatcttccatacagaagccatagagcttaacaag 21001662  T
Q  113 ataagggtgttgcaaagcagaaatcatgccgatctcagttaaaaactcacgattcccttgctttgatttagaagaaagttgctt 196  Q
    ||  |||||||| |||| |||||||||||| |||||| | | ||| ||||||   |||||  ||||||||||||| || |||||    
T  21001661 attggggtgttgtaaagtagaaatcatgccaatctcattaataaattcacgagatccttgtgttgatttagaagatagctgctt 21001578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 21009606 - 21009789
Alignment:
Q  13 aattaccaaataaagcacgagctaaactattgttttccaagtactcatatatcagcaacaactgatctccctctacacaacaaccgtggagtctaacaag 112  Q
    |||||||||||| |||| |||| | |||||||||||||| ||| |||||||||| ||||||||||||  | || | |||  | || | |||  |||||||    
T  21009606 aattaccaaatagagcatgagcaagactattgttttccatgtattcatatatcaacaacaactgatcatcttccatacagaagccatagagcttaacaag 21009705  T
Q  113 ataagggtgttgcaaagcagaaatcatgccgatctcagttaaaaactcacgattcccttgctttgatttagaagaaagttgctt 196  Q
    ||  |||||||| |||| ||||||||| || |||||| | | ||| ||||||   |||||  ||||||||||||| || |||||    
T  21009706 attggggtgttgtaaagtagaaatcatcccaatctcattaataaattcacgagatccttgtgttgatttagaagatagctgctt 21009789  T

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