View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_low_63 (Length: 205)
Name: NF9753_1D_low_63
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_63 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 29105039 - 29104866
Alignment:
| Q |
13 |
gaagccattcagtatattcaccacgttcaccaacttcaaagagccatgcactcgttactcgagctcgaaccatcgtctccgaaactcatccatgcacaaa |
112 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29105039 |
gaagccattcagtatattcaccacgttaaccaacttcaaagagccatgcactcgttactcgagctcgaaccatcgtctccgaaactcatccatgctcaaa |
29104940 |
T |
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| Q |
113 |
acctaatgcaaatcgctatgaagaggctccaaaaagagttttaccagatattaaccatgaaccaggcttgctta |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29104939 |
acctaatgcaaatcgctatgaagaggctccaaaaagagttttaccagatattaaccatgaaccaggcctgctta |
29104866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 12 - 179
Target Start/End: Complemental strand, 29090779 - 29090612
Alignment:
| Q |
12 |
tgaagccattcagtatattcaccacgttcaccaacttcaaagagccatgcactcgttactcgagctcgaaccatcgtctccgaaactcatccatgcacaa |
111 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
29090779 |
tgaagccattcagtacattcaccacgttaaccaacttcaaagagccatgcactcgttactcgagctcgaaccatcgtctccagaactcatccacgcacaa |
29090680 |
T |
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| Q |
112 |
aacctaatgcaaatcgctatgaagaggctccaaaaagagttttaccagatattaaccatgaaccaggc |
179 |
Q |
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|||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||| |
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| T |
29090679 |
aacctaatgcaaattgctatgaagaggctccaaaaagaattctaccagatcttaaccatgaaccaggc |
29090612 |
T |
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